View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5983_low_5 (Length: 393)
Name: NF5983_low_5
Description: NF5983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5983_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 13 - 369
Target Start/End: Complemental strand, 29980565 - 29980203
Alignment:
| Q |
13 |
atactaggttttcgagaaaaaaggtgatattcaactagtttaagaagactacaatgattnnnnnnnnn------cagatatgattaccactatcttatat |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
29980565 |
atactaggttttcgagaaaaaaggtgatattcaactagtttaagaagactacaatgattaaaaaaaaaaaaaaacagatatgattgccactatcttatat |
29980466 |
T |
|
| Q |
107 |
acatgcatgcatgcattcattctggaacaatacctatataattacaattacaatagcacaagtagattttcactcacaaaatttaatcaaacgtgtgtct |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29980465 |
acatgcatgcatgcattcattctggaacaatacttatataattacaattacaatagcacaagtagattttcactcacaaaatttaatcaaacgtgtgtct |
29980366 |
T |
|
| Q |
207 |
gcggttgcccacgtgttggtgagaaaattatggaaggttgccagccttgagccttggcatagaccagaccgccgacggggccaagaccacaccactcacc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29980365 |
gcggttgcccacgtgttggtgagaaaattatggaaggttgccagccttgagccttggcatagaccagaccgccgacggggccaagaccacaccactcacc |
29980266 |
T |
|
| Q |
307 |
caagtctcactttctttcttcttcatctgttgctactgagtcaaaccaaacccaaacacaaac |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29980265 |
caagtctcactttctttcttcttcatctgttgctactgagtcaaaccaaacccaaacacaaac |
29980203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University