View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5983_low_7 (Length: 388)
Name: NF5983_low_7
Description: NF5983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5983_low_7 |
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| [»] scaffold0164 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 2 - 367
Target Start/End: Complemental strand, 23126220 - 23125855
Alignment:
| Q |
2 |
aatatgaaatagaaaatcattttgaatactttcttcttgattaatggtagaaccttgatgcacattgatacttttcgccggtggccaaggacgacaaacc |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23126220 |
aatatgaaatagaaaatcattttgaatactttcttcttgattaatggtagaaccttgatgcacattgatacttttcgccggtggccaaggacgacaaacc |
23126121 |
T |
|
| Q |
102 |
ttccccttttctcatttctcttcctcaaaggagataattttgtaatctcttcctttctcttcaacnnnnnnnggaatacgtgtatgcaagtgttcctttc |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
23126120 |
ttccccttttctcatttctcttcctcaaaggagataattttgtaatctcttcctttctcttcaacaaaaaaaggaatacgtgtatgcaagtgttcctttc |
23126021 |
T |
|
| Q |
202 |
tcttccttttcataagcttttaattgtggttgtttgtaatctcattcttcttcttgattgttctacaaatttccccttgttctcataaagcataataagg |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23126020 |
tcttccttttcataagcttttaattgtggttgtttgtaatctcattcttcttcttgattgttctacaaatttccccttgttctcataaagcataataagg |
23125921 |
T |
|
| Q |
302 |
ccatgaattcctagtattcaacgcaccctgctttttccatctttaatattaattcaattaatgttc |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23125920 |
ccatgaattcctagtattcaacgcaccctgctttttccatctttaatattaattcaattaatgttc |
23125855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 140 - 367
Target Start/End: Original strand, 18693876 - 18694103
Alignment:
| Q |
140 |
tttgtaatctcttcctttctcttcaacnnnnnnnggaatacgtgtatgcaagtgttcctttctcttccttttcataagcttttaattgtggttgtttgta |
239 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
18693876 |
tttgtaatctcttcctttctcttcaacaaaaaaaggaatacgtgtatgcaagtattcatttctcttccttttcataagcttttaattgtggttgtttgta |
18693975 |
T |
|
| Q |
240 |
atctcattcttcttcttgattgttctacaaatttccccttgttctcataaagcataataaggccatgaattcctagtattcaacgcaccctgctttttcc |
339 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
18693976 |
atctcattcttcttcttgattgttctacaaatttccccttgttctcataaagcataataaggccatgaattcctagtattcaatgcaccatgctttttcc |
18694075 |
T |
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| Q |
340 |
atctttaatattaattcaattaatgttc |
367 |
Q |
| |
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||||||||||||||||||||||| |||| |
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| T |
18694076 |
atctttaatattaattcaattaacgttc |
18694103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 4 - 128
Target Start/End: Original strand, 18701146 - 18701270
Alignment:
| Q |
4 |
tatgaaatagaaaatcattttgaatactttcttcttgattaatggtagaaccttgatgcacattgatacttttcgccggtggccaaggacgacaaacctt |
103 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
18701146 |
tatgaaatagaaaatcattttgaacactttcttcttgattaatggtagaaccttgatgcacattgatacttttcgccggtggccaaggacgacaaaccat |
18701245 |
T |
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| Q |
104 |
ccccttttctcatttctcttcctca |
128 |
Q |
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||||||||||||||||||||||||| |
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| T |
18701246 |
ccccttttctcatttctcttcctca |
18701270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 194 - 362
Target Start/End: Original strand, 12823 - 12991
Alignment:
| Q |
194 |
ttcctttctcttccttttcataagcttttaattgtggttgtttgtaatctcattcttcttcttgattgttctacaaatttccccttgttctcataaagca |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
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| T |
12823 |
ttcctttctcttccttttcataagcttttaattgtggttgcttgtaatctcattcttcttcatgattgttctacaaagttccccttgttctcataaagca |
12922 |
T |
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| Q |
294 |
taataaggccatgaattcctagtattcaacgcaccctgctttttccatctttaatattaattcaattaa |
362 |
Q |
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||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
12923 |
taataaggccatgaattcctagtattcaacgtaccatgctttttccatctttaatattaattcaattaa |
12991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 4 - 135
Target Start/End: Complemental strand, 40801886 - 40801755
Alignment:
| Q |
4 |
tatgaaatagaaaatcattttgaatactttcttcttgattaatggtagaaccttgatgcacattgatacttttcgccggtggccaaggacgacaaacctt |
103 |
Q |
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|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
40801886 |
tatgaaatagaaaatcattttgaacacttttttcttgattaatggtagaaccttgatgcacattgatacttttcgccgatggccaatgacgacaaacctt |
40801787 |
T |
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| Q |
104 |
ccccttttctcatttctcttcctcaaaggaga |
135 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
40801786 |
ccccttttctcatttctcttcctcaaaggaga |
40801755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 298 - 367
Target Start/End: Complemental strand, 43806067 - 43805998
Alignment:
| Q |
298 |
aaggccatgaattcctagtattcaacgcaccctgctttttccatctttaatattaattcaattaatgttc |
367 |
Q |
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||||||| ||||| ||||| ||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
43806067 |
aaggccacgaatttgtagtagtcaacacaccatgctttttccatctttaatattaattcaattaatgttc |
43805998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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