View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5983_low_8 (Length: 353)
Name: NF5983_low_8
Description: NF5983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5983_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 13 - 267
Target Start/End: Complemental strand, 50373585 - 50373339
Alignment:
| Q |
13 |
gcagaacctgtgtagccgtaaaccagtgac----agtgagtggtgttgggaataggtttgttggagctagattgggaagtgaaaatatgtcgcacatatt |
108 |
Q |
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| T |
50373585 |
gcagaccctgtgtagccgtaaaccagtgactgacagtgagtggtgttgggaataggtttgttggagctagattgggaagtgaaaatatgtcgcacatatt |
50373486 |
T |
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| Q |
109 |
gtgaagctaactcctgtgcacatgcacatgcacatgcttaagcagctttgggatatagtagtggttccaagctccagctcaaattagtcatttatttttt |
208 |
Q |
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| T |
50373485 |
gtgaagctaactcctgtgcacatgc------------ttaagcagctttgggatatagtagtggttccaagctccagctcaaattagtcatttatttttt |
50373398 |
T |
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| Q |
209 |
gtggattctatagggactttatatctctgaactgttcgtttggaatcctctttaactcc |
267 |
Q |
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| T |
50373397 |
gtggattctatagggactttatatctctgaactgttcgtttggaatcctctttaactcc |
50373339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 291 - 334
Target Start/End: Complemental strand, 50373323 - 50373280
Alignment:
| Q |
291 |
tggttaacgatgaatgtgtacgactggattttctattaaactat |
334 |
Q |
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| T |
50373323 |
tggttaacgatgaatgtgtacgactggattttctattaaactat |
50373280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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