View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5983_low_9 (Length: 317)
Name: NF5983_low_9
Description: NF5983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5983_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 5e-96; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 105 - 306
Target Start/End: Original strand, 25645011 - 25645211
Alignment:
| Q |
105 |
aacgtggatagcaagccgttgaaccctttgcaagaacactctttccgtcgaaaaagagaaaaagaagctgcagacactctttcagttattcaaggagaac |
204 |
Q |
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| T |
25645011 |
aacgtggatagcatgcctttgaaccctttgcaagaacactctttccgtcgaaaaa-agaaaaagaagctgcagacactctttcagttattcaaggagaac |
25645109 |
T |
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| Q |
205 |
atcgttgaaaacttgaaataaaactcaaattcatattaggagtctccaattttttatattaagtttctaccggtttaaattaatatcattttgtaaaata |
304 |
Q |
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| T |
25645110 |
atcgttgaaaacttgaaataaaactcaaattcatattaggcgtctccaattttttatattaagtttctaccggtttaaattaatatctttttgtaaaata |
25645209 |
T |
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| Q |
305 |
tt |
306 |
Q |
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|| |
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| T |
25645210 |
tt |
25645211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 34 - 241
Target Start/End: Original strand, 25383181 - 25383388
Alignment:
| Q |
34 |
gcaggccttttagccttttgcaagatttggatgtcatttggtaccctcccaccgtgggtttgatgaaagttaacgtggatagcaagccgttgaacccttt |
133 |
Q |
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| T |
25383181 |
gcaggcctttgagccctttgcaggatttggaggtcatttggtaccctcccaccgtgggtttgttgaaagttaacgtggatagcaagcctttgagcccttt |
25383280 |
T |
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| Q |
134 |
gcaagaacactctttccgtcgaaaaagagaaaaagaagctgcagacactctttcagttattcaaggagaacatcgttgaaaacttgaaataaaactcaaa |
233 |
Q |
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| T |
25383281 |
gcaagaacactctttccgtcgaaaaagagaaaaagaagctgcagatactctttcagttattcaaggagaacatcgttgaaaacttgaaataaaactcaaa |
25383380 |
T |
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| Q |
234 |
ttcatatt |
241 |
Q |
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|||||||| |
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| T |
25383381 |
ttcatatt |
25383388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 123 - 306
Target Start/End: Original strand, 25691747 - 25691929
Alignment:
| Q |
123 |
ttgaaccctttgcaagaacactctttccgtcgaaaaagagaaaaagaagctgcagacactctttcagttattcaaggagaacatcgttgaaaacttgaaa |
222 |
Q |
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|||| |||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25691747 |
ttgagccctttgcaagaacactctttccgtcgaaaaa-agagaaagaagctgcagaaactctttcagttattcaaggagaacatcgttgaaaacttgaaa |
25691845 |
T |
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| Q |
223 |
taaaactcaaattcatattaggagtctccaattttttatattaagtttctaccggtttaaattaatatcattttgtaaaatatt |
306 |
Q |
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| T |
25691846 |
tgaaactcaaattcatattaggcgtctccaattttttatattaagtttctaccggtttaaattaatatctttttgtaaaatatt |
25691929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 25642856 - 25642948
Alignment:
| Q |
18 |
gtcactgcctaaaatagcaggccttttagccttttgcaagatttggatgtcatttggtaccctcccaccgtgggtttgatgaaagttaacgtg |
110 |
Q |
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| T |
25642856 |
gtcactgcctaaaatagcaggcatttgagccctttgcaagatttggatgtcatttggtaccctcccaccgtgggtttgatgaaagttaacgtg |
25642948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 25445373 - 25445443
Alignment:
| Q |
166 |
aagaagctgcagacactctt---tcagttattcaaggagaacatcgttgaaaacttgaaataaaactcaaa |
233 |
Q |
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|||||||||||||||||||| |||||| ||| ||||||| ||| || |||| ||||||||||||||||| |
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| T |
25445373 |
aagaagctgcagacactcttaaatcagttcttcgaggagaatatccttaaaaagttgaaataaaactcaaa |
25445443 |
T |
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