View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5984_high_1 (Length: 1063)
Name: NF5984_high_1
Description: NF5984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5984_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 572; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 240 - 835
Target Start/End: Complemental strand, 19577591 - 19576996
Alignment:
| Q |
240 |
ttcattcattcaattctcaaccccttttttcttcactcaattatcacactatggttcgtgaacacagagtcgattcattctacaccaaactccgtcaatc |
339 |
Q |
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| T |
19577591 |
ttcattcattcaattctcaaccccttctttcttcactcaattatcacactatggttcgtgaacacagagtcgattcattttacacaaaactccgtcagtc |
19577492 |
T |
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| Q |
340 |
cgcccaactttcttccaccacatcccccgtcctcattttcccctcaacctccgacgtcgattccctctgcgcactcaaaacccttttccgtattctcgaa |
439 |
Q |
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| T |
19577491 |
cgcccaactttcttccaccacatcccccgtcctcattttcccctcaacctccgacgtcgattccctctgcgcactcaaaacccttttccgtattctcgaa |
19577392 |
T |
|
| Q |
440 |
tccgattcaattcaatacgcatcttaccccgtttcatccttccgcgaaattcataattatgctaaacccaccccccaaaacattaaccacacctccattg |
539 |
Q |
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| T |
19577391 |
tccgattcaattcaatacgcatcttaccccgtttcatccttccgcgaaattcataattatgctaaacccaccccccaaaacattaaccacacctccattg |
19577292 |
T |
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| Q |
540 |
ttttaatcaactggggctctcataaagatcttcgcaaaatacttaacttaggtccttatgctactatcttcgttatcgatagtcaccgtccgattcatct |
639 |
Q |
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| T |
19577291 |
ttttaatcaactggggctctcataaagatcttcgcaaaatacttaacttaggtccttatgctactatcttcgttatcgatagtcaccgtccgattcatct |
19577192 |
T |
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| Q |
640 |
tcataatctcagtgaccagaatgattctgttgttgttctttttactcaagaagatgaaaaacaagcggatctcgcttatgattttgattttcctcttact |
739 |
Q |
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| T |
19577191 |
tcataatctcagtgaccagaatgattctgttgttgttctttttactcaagaagatgaaaaacaagcggatctcgcttatgattttgattttcctcttact |
19577092 |
T |
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| Q |
740 |
gctcttgctaatgcttcaactactattgattccgagtctgagtctgatgactctgactccgaatctgattcggattcagattcatctgaatccggt |
835 |
Q |
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| T |
19577091 |
gctcttgctaatgcttcaaccactattgattcggagtctgagtctgatgactctgactccgaatctgattcggattcagattcatctgaatccggt |
19576996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 4e-78
Query Start/End: Original strand, 896 - 1044
Target Start/End: Complemental strand, 19576929 - 19576781
Alignment:
| Q |
896 |
cgtcaagatccggtgaaaatgtataggaagaagaagaaagagtattatggattggggacgtttcatgggaagccttcagggtgtttgatgtatgagctag |
995 |
Q |
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| T |
19576929 |
cgtcaagatccggtgaaaatgtataggaagaagaagaaagagtattatggattggggacgtttcatgggaagccttcagggtgtttgatgtatgagctag |
19576830 |
T |
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| Q |
996 |
ctcattttctgaggaggaataccgatgaattgctttggttagcgtgtgt |
1044 |
Q |
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| T |
19576829 |
ctcattttctgaggaggaataccgatgaattgctttggttagcgtgtgt |
19576781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 17 - 171
Target Start/End: Complemental strand, 19577811 - 19577656
Alignment:
| Q |
17 |
caccatatcccctccctcaccgcgtgtcaaagtcatcatgaattaatcactttcattcaaatccaaatccaaatcc-nnnnnnntcataacaataccgcc |
115 |
Q |
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| T |
19577811 |
caccatatcccctccctcaccgcgtgtcaaagtcatcatgaattaatcactttcattcaaatccaaatccaaatccaaaaaaaatcacaacaataccgcc |
19577712 |
T |
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| Q |
116 |
aaattttcacgccgcgcctcctcaaattttcaaattcccccatcttcataactctc |
171 |
Q |
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| T |
19577711 |
aaattttcacgccgcgcctcctcaaattttcaaattcccccatcttcataactctc |
19577656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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