View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5984_high_10 (Length: 393)
Name: NF5984_high_10
Description: NF5984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5984_high_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 40 - 340
Target Start/End: Original strand, 29967434 - 29967738
Alignment:
| Q |
40 |
tgaaatgaaatgaaattattagttccaattaaacaacacaagttagttaccgttactttatgata----acttacggaagagggtaaccagaggttaaat |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
29967434 |
tgaaatgaaatgaaattattagttccaattaaacaacacaagttagttaccgttactttatgatatataacttacggaagagggtaaccagaggttaaat |
29967533 |
T |
|
| Q |
136 |
tagtttctgagaagagaatagagtgaaagtgtataggctggtgagtctgaagaaaatgagcccagagttcgttatcggagacgagagatcgccatgactt |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29967534 |
tagtttctgagaagagaatagagtgaaagtgtataggctggtgagtctgaagaaaatgagcccagagttcgttatcggagacgagagatcgccatgactt |
29967633 |
T |
|
| Q |
236 |
gcaaacgaggcagagtttggcagcatgtttagggcttaatagtcttgtgattttgaggagtatttcaggagggagtgagtcaaataaacccaaaggactc |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
29967634 |
gcaaacgaggcagagtttggcagcatgtttagggcctaatagtcttgtgattttgaggagtatgtcaggagggagtgagtcaaataaacccaaaggactc |
29967733 |
T |
|
| Q |
336 |
ggagc |
340 |
Q |
| |
|
||||| |
|
|
| T |
29967734 |
ggagc |
29967738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University