View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5984_high_16 (Length: 241)
Name: NF5984_high_16
Description: NF5984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5984_high_16 |
 | |
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| [»] chr8 (5 HSPs) |
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| [»] chr6 (3 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0464 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 25 - 241
Target Start/End: Original strand, 18803148 - 18803365
Alignment:
| Q |
25 |
aacttcttattttgctacaactgttttgttatggacttctaattttgctacagctgttttgaatgttcagtcactagtgtttcgttttttgaatgtttaa |
124 |
Q |
| |
|
||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
18803148 |
aacttctaattttgctacagctgtttttttatggacttctaattttgctacagctgttttgaatgttcagtcactagtgtttcgttttttaaatgtttaa |
18803247 |
T |
|
| Q |
125 |
gcttggcactgtatatattttgttttagttaagttgatgtatggatcaaacttcttactcttgaa-tcatgtatatttttcattttaagtctttagtaat |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||| |
|
|
| T |
18803248 |
acttggcactgtatatattttgttttagttaagttgatgtatggatcaaacttcttactcttgaatttatgtatattttgcattttaagtctttagtaat |
18803347 |
T |
|
| Q |
224 |
atattttgagattgtctt |
241 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
18803348 |
atattttgagattgtctt |
18803365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 25 - 241
Target Start/End: Original strand, 15334209 - 15334415
Alignment:
| Q |
25 |
aacttcttattttgctacaactgttttgttatggacttctaattttgctacagctgttttgaatgttcagtcactagtgtttcgttttttgaatgtttaa |
124 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15334209 |
aacttctaattttgctacagctgttttgttatggacttctaattttgctacagctgttttgaatgttcagtcactagtgtttcgttttttgaatgtttaa |
15334308 |
T |
|
| Q |
125 |
gcttggcactgtatatattttgttttagttaagttgatgtatggatcaaacttcttactcttgaatcatgtatatttttcattttaagtctttagtaata |
224 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
15334309 |
acttggcactgcatatattttgttttagttaagttgatgtatggatcaaactt----------aattatgtatattttgcattttaagtctttagtaata |
15334398 |
T |
|
| Q |
225 |
tattttgagattgtctt |
241 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
15334399 |
tattttgagattgtctt |
15334415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 25 - 241
Target Start/End: Original strand, 15514578 - 15514784
Alignment:
| Q |
25 |
aacttcttattttgctacaactgttttgttatggacttctaattttgctacagctgttttgaatgttcagtcactagtgtttcgttttttgaatgtttaa |
124 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15514578 |
aacttctaattttgctacagctgttttgttatggacttctaattttgctacagctgttttgaatgttcagtcactagtgtttcgttttttgaatgtttaa |
15514677 |
T |
|
| Q |
125 |
gcttggcactgtatatattttgttttagttaagttgatgtatggatcaaacttcttactcttgaatcatgtatatttttcattttaagtctttagtaata |
224 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
15514678 |
acttggcactgcatatattttgttttagttaagttgatgtatggatcaaactt----------aattatgtatattttgcattttaagtctttagtaata |
15514767 |
T |
|
| Q |
225 |
tattttgagattgtctt |
241 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
15514768 |
tattttgagattgtctt |
15514784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 59 - 241
Target Start/End: Complemental strand, 14979717 - 14979535
Alignment:
| Q |
59 |
acttctaattttgctacagctgttttgaatgttcagtcactagtgtttcgttttttgaatgtttaagcttggcactgtatatattttgttttagttaagt |
158 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||| ||||||||||||||||| |
|
|
| T |
14979717 |
acttctaattttgctacaactgttttgaatgttcagtcactagtgtttcgttttttgaatgtttaaacttgacactatatatcttttgttttagttaagt |
14979618 |
T |
|
| Q |
159 |
tgatgtatggatcaaacttcttactcttgaatcatgtatatttttcattttaagtctttagtaatatattttgagattgtctt |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14979617 |
tgatgtatggatcaaacttcttactcttgaattatgtatattttgcattttaagtctttagtaatatattttgagattgtctt |
14979535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 59 - 241
Target Start/End: Original strand, 15423306 - 15423478
Alignment:
| Q |
59 |
acttctaattttgctacagctgttttgaatgttcagtcactagtgtttcgttttttgaatgtttaagcttggcactgtatatattttgttttagttaagt |
158 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
15423306 |
acttctaattttgctacagctgttttgaatgttcagtcactagtgtttcgttttttgaatgtttaaacttggcactgcatatattttgttttagttaagt |
15423405 |
T |
|
| Q |
159 |
tgatgtatggatcaaacttcttactcttgaatcatgtatatttttcattttaagtctttagtaatatattttgagattgtctt |
241 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15423406 |
tgatgtatggatcaaactt----------aattatgtatattttgcattttaagtctttagtaatatattttgagattgtctt |
15423478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 25 - 241
Target Start/End: Original strand, 14963775 - 14963992
Alignment:
| Q |
25 |
aacttcttattttgctacaactgttttgttatggacttctaattttgctacagctgttttgaatgttcagtcactagtgtttcgttttttgaatgtttaa |
124 |
Q |
| |
|
||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
14963775 |
aacttctaattttgctacagctgtttttttatggacttctaattttgctacagctgttttgaatgttcagtcactagtgtttcgttttttaaatgtttaa |
14963874 |
T |
|
| Q |
125 |
gcttggcactgtatatattttgttttagttaagttgatgtatggatcaaacttcttactcttgaa-tcatgtatatttttcattttaagtctttagtaat |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||| |
|
|
| T |
14963875 |
acttggcactgtatatattttgttttagttaagttgatgtatggatcaaacttcttactcttgaatttatgtatattttgcattttaagtctttagtaat |
14963974 |
T |
|
| Q |
224 |
atattttgagattgtctt |
241 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
14963975 |
atattttgagattgtctt |
14963992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 53 - 124
Target Start/End: Complemental strand, 12354257 - 12354185
Alignment:
| Q |
53 |
ttatggacttctaattttgctacagctgttttgaatgttcagtcactagtgtttc-gttttttgaatgtttaa |
124 |
Q |
| |
|
||||||| ||||||||||| ||||| ||||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
12354257 |
ttatggatttctaattttggtacagttgttttgaatgtttagtcactagtgtttcggttttttgaatgtttaa |
12354185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 184
Target Start/End: Complemental strand, 12354111 - 12354069
Alignment:
| Q |
142 |
ttttgttttagttaagttgatgtatggatcaaacttcttactc |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
12354111 |
ttttgttttagttaagttgatgtatggatcaaactttttactc |
12354069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 59 - 241
Target Start/End: Original strand, 48631343 - 48631525
Alignment:
| Q |
59 |
acttctaattttgctacagctgttttgaatgttcagtcactagtgtttcgttttttgaatgtttaagcttggcactgtatatattttgttttagttaagt |
158 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||| |||||||||| |||| |||||||||||| |
|
|
| T |
48631343 |
acttctaattttgctacagctgttttgaatgttcaatcactagtgtttcattttttgaatgtttaaacttgccactgtatatcttttattttagttaagt |
48631442 |
T |
|
| Q |
159 |
tgatgtatggatcaaacttcttactcttgaatcatgtatatttttcattttaagtctttagtaatatattttgagattgtctt |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
48631443 |
tgatgtatggatcaaacttcttactcttgaattatgtatattttgcattttaaatctttagtaatatattttgagattgtctt |
48631525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 59 - 237
Target Start/End: Complemental strand, 21300936 - 21300758
Alignment:
| Q |
59 |
acttctaattttgctacagctgttttgaatgttcagtcactagtgtttcgttttttgaatgtttaagcttggcactgtatatattttgttttagttaagt |
158 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| | | ||||| ||||||||||||||||| |
|
|
| T |
21300936 |
acttctaattttgctacagctgttttgaatgttcagtcactagtgttttgttttttgaatgtttaaacttggtattatatatcttttgttttagttaagt |
21300837 |
T |
|
| Q |
159 |
tgatgtatggatcaaacttcttactcttgaatcatgtatatttttcattttaagtctttagtaatatattttgagattg |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
21300836 |
tgatgtatggatcaaacttcttactcttgaattatgtatattttgcattttaagtctttagtaatatattttgagattg |
21300758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 64 - 229
Target Start/End: Original strand, 137476 - 137641
Alignment:
| Q |
64 |
taattttgctacagctgttttgaatgttcagtcactagtgtttcg-ttttttgaatgtttaagcttggcactgtatatattttgttttagttaagttgat |
162 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||| |||| | ||||| ||||||||||||||||||||| |
|
|
| T |
137476 |
taattttgctacagttgttttgaatgttcagtcattagtgtttcgattttttgaatgtttaaatttggtgc--tatatcttttgttttagttaagttgat |
137573 |
T |
|
| Q |
163 |
gtatggatcaaacttcttactcttgaatcatgtatattttt-cattttaagtctttagtaatatattt |
229 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
137574 |
gtatggatcaaacttcttactcttgaattatgtatatttttgcatttcaagtctttagtaatatattt |
137641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 139; Significance: 7e-73; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 59 - 241
Target Start/End: Original strand, 4104462 - 4104644
Alignment:
| Q |
59 |
acttctaattttgctacagctgttttgaatgttcagtcactagtgtttcgttttttgaatgtttaagcttggcactgtatatattttgttttagttaagt |
158 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||| ||| ||||| ||||||||||| ||||| |
|
|
| T |
4104462 |
acttctaattttgctacagctgttttgaatgttcagtcactagtgttttgatttttgaatgtttaaacttgggactatatatcttttgttttagataagt |
4104561 |
T |
|
| Q |
159 |
tgatgtatggatcaaacttcttactcttgaatcatgtatatttttcattttaagtctttagtaatatattttgagattgtctt |
241 |
Q |
| |
|
|| ||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4104562 |
tgttgtatggataaaacttcttactcttgaattatgtatattttgcattttaagtctttagtaatatattttgagattgtctt |
4104644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 53 - 241
Target Start/End: Original strand, 35185603 - 35185794
Alignment:
| Q |
53 |
ttatggacttctaattttgctacagctgttttgaatgttcagtcactagtgtttcg-ttttttgaatgtttaagcttggcactg-tatatattttgtttt |
150 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| || ||||| ||||||||| |
|
|
| T |
35185603 |
ttatggacttttaattttgctacagctgttttgaatgttcagtcactagtgtttcggttttttgaatgtttaaacttgg---tgatatatcttttgtttt |
35185699 |
T |
|
| Q |
151 |
agttaagttgatgtatggatcaaacttcttactcttgaatcatgtatattttt-cattttaagtctttagtaatatat---tttgagattgtctt |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
35185700 |
agttaagttgatgtatggatcaaacttcttactcttgaattatgtatatttttgcatttcaagtctttagtaatatatttatttgagattgtctt |
35185794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0464 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: scaffold0464
Description:
Target: scaffold0464; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 59 - 241
Target Start/End: Original strand, 4001 - 4182
Alignment:
| Q |
59 |
acttctaattttgctacagctgttttgaatgttcagtcactagtgtttcg-ttttttgaatgtttaagcttggcactgtatatattttgttttagttaag |
157 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||| ||||| | | ||||| ||| |||||||||||| |
|
|
| T |
4001 |
acttctaattttgctacaactgttttgaatgttcagtcactagtgtttgggttttttgaatgtttaaacttggtattatatatctttggttttagttaag |
4100 |
T |
|
| Q |
158 |
ttgatgtatggatcaaacttcttactcttgaatcatgtatatttttcattttaagtctttagtaatatattttgagattgtctt |
241 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4101 |
ttgacgtatggatcaaacttcttactcttgaattatgtatattttgcattttaagtctttagtaatata--ttgagattgtctt |
4182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 53 - 229
Target Start/End: Original strand, 1394223 - 1394399
Alignment:
| Q |
53 |
ttatggacttctaattttgctacagctgttttgaatgttcagtcactagtgtttc-gttttttgaatgtttaagcttggcactgtatatattttgtttta |
151 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| | ||||| ||| |||||| |
|
|
| T |
1394223 |
ttatggacttctaattttgctacagttgttttgaatgttcagtcactagtgtttcggttttttgaatgtttaaacttggtgc--tatatctttggtttta |
1394320 |
T |
|
| Q |
152 |
gttaagttgatgtatggatcaaacttcttactcttgaatcatgtatattttt-cattttaagtctttagtaatatattt |
229 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| || ||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
1394321 |
gttaagttgatgtatagatcaaacttcttactcttgaattatatatatttttgcatttcaagtctttagtaatatattt |
1394399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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