View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5984_high_5 (Length: 570)
Name: NF5984_high_5
Description: NF5984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5984_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 479; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 13 - 554
Target Start/End: Complemental strand, 42159427 - 42158873
Alignment:
| Q |
13 |
ttctacttataggaacctttagtcgctatagacgaagccctttacaaatcatttcagaaagaacaaa-------------ctaatctactatatatagta |
99 |
Q |
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| T |
42159427 |
ttctacttataggaaactttagtcgctatagacgaagcactttaaaaatcatttcagaaagaaaaaaaattatatacatactaatctactatatatagta |
42159328 |
T |
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| Q |
100 |
agaagatatatatgttatctgtttgagaaactagtttgtaaaacggcatcggtattggcaggggctgaggtaacaatatcaacaagcagtcgtcgtagtt |
199 |
Q |
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| T |
42159327 |
agaagatatatatgttatctgtttgagaaactagtttgtaaaatggcatcggtattggcaggggatgaggtgacaatatcaacaagcagtcgtcgtagtt |
42159228 |
T |
|
| Q |
200 |
gggcgtcgacgagtttccgggacgtatggacggcaacagcagcggccattcccgacgtgtttgagcgaagtgatcggcacacacaagaggatgatgagta |
299 |
Q |
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| T |
42159227 |
gggcgtcgacgagtttccgggacgtatggacggcaacagcagcgtccattcccgacgtgtttgagcgaagtgatcggcacacacaagaggatgatgagta |
42159128 |
T |
|
| Q |
300 |
tcacctcacttgggcagccattgagcggttgcctacttttgagcgtatgagaaaaggtgtagtgaagcatgttggtgaaaatggaaaagttgtgcatgat |
399 |
Q |
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| T |
42159127 |
tcacctcacttgggcagccattgagcggttgcctacttttgagcgtatgagaaaaggtgtagtgaagcatgttggtgaaaatggaaaagttgtgcatgat |
42159028 |
T |
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| Q |
400 |
gaagttgatgttgctaaacttggtttacatgataagaagatcttgttggatagtatcctcaagattgttgaagaagacaatgagaagtttcttaggaaac |
499 |
Q |
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| T |
42159027 |
gaagttgatgttgctaaacttggtttacatgataagaagatcttgttggatagtatcctcaagattgttgaagaagacaatgagaagtttcttaggaaac |
42158928 |
T |
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| Q |
500 |
ttagagacagacaagacaggtttgtctctttatctttagatttggattttatatc |
554 |
Q |
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| T |
42158927 |
ttagagacagacaagacaggtttgtctctttatctttagatttggattttatatc |
42158873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 117 - 523
Target Start/End: Complemental strand, 42180284 - 42179878
Alignment:
| Q |
117 |
tctgtttgagaaactagtttgtaaaacggcatcggtattggcaggggctgaggtaacaatatcaacaagcagtcgtcgtagttgggcgtcgacgagtttc |
216 |
Q |
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| T |
42180284 |
tctgtttgagaaactagttagtaaaatggcatccgtattggcaggggatgaggtgacaatatcaacaagtagtagtcggagttggaagtcgatgagtttc |
42180185 |
T |
|
| Q |
217 |
cgggacgtatggacggcaacagcagcggccattcccgacgtgtttgagcgaagtgatcggcacacacaagaggatgatgagtatcacctcacttgggcag |
316 |
Q |
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| T |
42180184 |
caggacatatggacagcaacagcaggggcagttcccgacgtgttcgagcggagtgatcgacacacacaggaggatgacgagtatcacctcacctgggcag |
42180085 |
T |
|
| Q |
317 |
ccattgagcggttgcctacttttgagcgtatgagaaaaggtgtagtgaagcatgttggtgaaaatggaaaagttgtgcatgatgaagttgatgttgctaa |
416 |
Q |
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| T |
42180084 |
ccattgagcggttgcctactttagagagaatgagaaaaggtgtaatgaaacacgttgatgaaaatggaaaagttgggcatgatgaagttgatgttgcgaa |
42179985 |
T |
|
| Q |
417 |
acttggtttacatgataagaagatcttgttggatagtatcctcaagattgttgaagaagacaatgagaagtttcttaggaaacttagagacagacaagac |
516 |
Q |
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| T |
42179984 |
acttggtttacatgacaaaaaactcttgttggatagcatccttaagattgttgaagaagacaatgagaagtttctaagaaaacttagagacagacaagac |
42179885 |
T |
|
| Q |
517 |
aggtttg |
523 |
Q |
| |
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||||||| |
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| T |
42179884 |
aggtttg |
42179878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 122 - 547
Target Start/End: Complemental strand, 42146992 - 42146585
Alignment:
| Q |
122 |
ttgagaaactagtttgtaaaacggcatcggtattggcaggggctgaggtaacaatatcaacaagcagtcgtcgtagttgggcgtcgacgagtttccggga |
221 |
Q |
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| T |
42146992 |
ttgagaaattagttagtaaaatggcatcggtaatggcaagggatgaggtgacaatatcaacaagcagtcgtcg---------------gagtttccggga |
42146908 |
T |
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| Q |
222 |
cgtatggacggcaacagcagcggccattcccgacgtgtttgagcgaagtgatcggcacacacaagaggatgatgagtatcacctcacttgggcagccatt |
321 |
Q |
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| T |
42146907 |
gatgtggccagtgacagcagctgc---tccggacgtgttcgagcggagtgatcgacacacacaagaggatgatgagtatcacctcacttgggtagccatt |
42146811 |
T |
|
| Q |
322 |
gagcggttgcctacttttgagcgtatgagaaaaggtgtagtgaagcatgttggtgaaaatggaaaagttgtgcatgatgaagttgatgttgctaaacttg |
421 |
Q |
| |
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|||||| |||||||||||||| | ||||||||||||||| | || || |||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42146810 |
gagcggctgcctacttttgagagaatgagaaaaggtgtaataaaacacgttgatgaaaatggaaaagttgtgcatgatgaagttgatgttgcgaaacttg |
42146711 |
T |
|
| Q |
422 |
gtttacatgataagaagatcttgttggatagtatcctcaagattgttgaagaagacaatgagaagtttcttaggaaacttagagacagacaagacaggtt |
521 |
Q |
| |
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|||| ||||| || || ||||||||||||| ||||| |||||||| ||||||||||||||||||||||| || |||||||||||| ||||||||||||| |
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| T |
42146710 |
gttttcatgacaaaaaactcttgttggatagcatccttaagattgtcgaagaagacaatgagaagtttctcagaaaacttagagaccgacaagacaggtt |
42146611 |
T |
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| Q |
522 |
tgtctctttatctttagatttggatt |
547 |
Q |
| |
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|||||||||||||||| |||| |||| |
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| T |
42146610 |
tgtctctttatctttatattttgatt |
42146585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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