View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5984_low_13 (Length: 300)
Name: NF5984_low_13
Description: NF5984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5984_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 292
Target Start/End: Original strand, 37129118 - 37129391
Alignment:
| Q |
19 |
gttccgtgtttacgctatatagtacaaaatgctgtcagatagtgtctatagcggtgcaatagcactgttgcgtagcagagtttaaacaaactgctattat |
118 |
Q |
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| T |
37129118 |
gttccgtgtttatgctatatagtacaaaatgttgtcagatagtgtctatagcggtgcaatagccctgttgcgtagcagagtttaaacaaactgctattat |
37129217 |
T |
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| Q |
119 |
cccctgacccgcgattgaaaacactgttatcgtatttgatacactaaaggatatgatgggtttgtctatctagctagtacaagtagtaatagacagatgt |
218 |
Q |
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| T |
37129218 |
cccctgacccgcgattgaaaacactgttatcgtatttgatacactaaaggatatgatgtgtttgtctatctagcaagttcaagtagtaatagacagatgt |
37129317 |
T |
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| Q |
219 |
ttgcatgctgcttggtgaacttctgtagttttatttgatatatgttgtgattaaaacttcatctttcctatgct |
292 |
Q |
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| T |
37129318 |
ttgcatgctgcttggtgaacttctgtagttttatttgatatatgttgtgattaaaacttcatctttcctatgct |
37129391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 107
Target Start/End: Complemental strand, 6025999 - 6025924
Alignment:
| Q |
32 |
gctatatagtacaaaatgctgtcagatagtgtctatagcggtgcaatagcactgttgcgtagcagagtttaaacaa |
107 |
Q |
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| T |
6025999 |
gctatttagtacaaaatgttgtcaaatagtggctatagcagcgctatagcactgttgggcagcagaattttaacaa |
6025924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 116
Target Start/End: Complemental strand, 43391562 - 43391479
Alignment:
| Q |
33 |
ctatatagtacaaaatgctgtcagatagtgtctatagcggtgcaatagcactgttgcgtagcagagtttaaacaaactgctatt |
116 |
Q |
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| T |
43391562 |
ctatttagtacaaaatgttgtcaaatggcggctatagcattgctatagcactgttgcatagcagaactcaaacaaactgctatt |
43391479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 109
Target Start/End: Complemental strand, 40213921 - 40213841
Alignment:
| Q |
29 |
tacgctatatagtacaaaatgctgtcagatagtgtctatagcggtgcaatagcactgttgcgtagcagagtttaaacaaac |
109 |
Q |
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| T |
40213921 |
tacgctatgtagtacaaaatgttgtcaaatggtagctatattggtgctatagcactgttgcgtagcaaaatttaaacaaac |
40213841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 41364954 - 41365030
Alignment:
| Q |
36 |
tatagtacaaaatgctgtcagatagtgtctatagcggtgcaatagcactgttgcgtagcagagtttaaacaaactgc |
112 |
Q |
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| T |
41364954 |
tatagtacaaaatattgtgaaatagcgtctataacagcgctatagcactgttgcgtagcagaatttgaacaaactgc |
41365030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 107
Target Start/End: Original strand, 34581608 - 34581686
Alignment:
| Q |
29 |
tacgctatatagtacaaaatgctgtcagatagtgtctatagcggtgcaatagcactgttgcgtagcagagtttaaacaa |
107 |
Q |
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|||||||| |||||||||||| ||||| |||| | |||||| | || ||||||||||| |||| |||| ||||||||| |
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| T |
34581608 |
tacgctatttagtacaaaatgttgtcaaatagcggctatagtagcgctatagcactgttacgtatcagaatttaaacaa |
34581686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 13260679 - 13260732
Alignment:
| Q |
38 |
tagtacaaaatgctgtcagatagtgtctatagcggtgcaatagcactgttgcgt |
91 |
Q |
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| T |
13260679 |
tagtacaaaatgctgtcaaatagtgattataacagtgctatagcactgttgcgt |
13260732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 116
Target Start/End: Complemental strand, 24672890 - 24672808
Alignment:
| Q |
33 |
ctatatagtacaaaatgctgtcagatagtgtctatagcggtgcaatagcactgttgcgtagcagagtttaaacaaactgctatt |
116 |
Q |
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| T |
24672890 |
ctatatagtacaaa-tattgtcaaataggctctatagcggtgccatatcactattgcgtagcagaatttgaacaaaccgctatt |
24672808 |
T |
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