View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5984_low_17 (Length: 239)
Name: NF5984_low_17
Description: NF5984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5984_low_17 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 32674807 - 32675034
Alignment:
| Q |
18 |
gtgttgttagaacttcttttaccttattttgaggaaatgaatttaaaataaa------aaaggagttaaagaattgaaacttacatggctttggaataga |
111 |
Q |
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| T |
32674807 |
gtgttgttagaacttcttttaccttattttgaggaaatgaatttaaaataaataaaaaaaaggagttaaagaattgaaacttacatggctttggaataga |
32674906 |
T |
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| Q |
112 |
agtttccaagtcgcttctaacccttctctgagcagtaacaggtgcattacgagcctcggttatcattgattccctctccatttccacagacattttgatt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32674907 |
agtttccaagtcgcttctaacccttctctgagcagtaacaggggcattacgagcctcggttatcattgattccctctccatttccacagacattttgatt |
32675006 |
T |
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| Q |
212 |
gtttctcttttgagttaattaagcttgc |
239 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
32675007 |
gtttctcttttgagttaattaagcttgc |
32675034 |
T |
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