View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5984_low_2 (Length: 794)
Name: NF5984_low_2
Description: NF5984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5984_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 93 - 499
Target Start/End: Original strand, 8131773 - 8132179
Alignment:
| Q |
93 |
tggaaggaatcgtccacttcctcattgcaatgacagtgtaaacaatttcgagaaggttctaacagaacgtttggtttagaatgaagattgatttcgttac |
192 |
Q |
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| T |
8131773 |
tggaaggaatcgtccacttcctcattgcaatgacagtgtaaacaatttcgagaaggttctaacagaacgtttagtttagaatgaagattgatttcgttac |
8131872 |
T |
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| Q |
193 |
tacacttcctgagtatatatactctctcggattttgtatttgtgacctgaattttaatttattttccttgctgggacgaagcatgggagcggtttgattt |
292 |
Q |
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| T |
8131873 |
tacacttcttgagtatatatactctctcggattttgtatttgtgacctgaattttaatttattttccttgctgggacgaagcatgggagcggttggattt |
8131972 |
T |
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| Q |
293 |
gccagcgtggatgatctgacggttaaggaggcttttagtgcaacgtggcgttgattaattggtttgatctagttgcttcgacgtggagatgttaagtgag |
392 |
Q |
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| T |
8131973 |
gccagcgtggatgatctgacggttaaggagggtttcagtgcaacgtggcgttgattaattggtttgatctagttgcttcgacgtggagatgttaagtgag |
8132072 |
T |
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| Q |
393 |
ttaagtgtcactatgtaatggatggacccacatggacgacttggaattttcaagtccaccattgccgtttgtgatacttctgattatgtgacaaggatga |
492 |
Q |
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| T |
8132073 |
ttaagtgtcactatgtaatggatggacccacatggacgacttggaattttcaagtccaccattgccgtttgtgatacttctgattatgtgacaaggatga |
8132172 |
T |
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| Q |
493 |
tattcat |
499 |
Q |
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| T |
8132173 |
tattcat |
8132179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 491 - 783
Target Start/End: Original strand, 8133312 - 8133592
Alignment:
| Q |
491 |
gatattcattggttatannnnnnngctttctacgtggaatgatattcattggttatagtcaatgatatttgattaaggtgtcttctctaaatctatgcga |
590 |
Q |
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| T |
8133312 |
gatattcattggttatatttttttgctttctacgtggaatgatattcattggttatagtcaatgatatttgattaaggtgtcttct--------atgcga |
8133403 |
T |
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| Q |
591 |
attgagggtgtcttagtaa-tgtaatttgttatggggtttggtgtgtggatcatactttatttaagattggacgtcagttttttgacttaannnnnnnnn |
689 |
Q |
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| T |
8133404 |
attgagggtgtcttagtaaatgtaatttgttatggggtttggtgtatcgatcgtactttatttaagatccg-cgtcagtttcttgacttaaattttttt- |
8133501 |
T |
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| Q |
690 |
nnngacttgttttgatgttttctccaatagaccgaggattaattggtggtggaattcgaatgagtgctgaaatttggttgagttgtggtgatga |
783 |
Q |
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| T |
8133502 |
---gacttgttttgatgtcttctccaataaaccgaggattaattggtggtggaattcgaatgagtgctgaaatttggttgagttgtggtgatga |
8133592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 720 - 783
Target Start/End: Original strand, 37831105 - 37831168
Alignment:
| Q |
720 |
accgaggattaattggtggtggaattcgaatgagtgctgaaatttggttgagttgtggtgatga |
783 |
Q |
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| T |
37831105 |
accgaggattgattggtggtggaatctgaatgagtgttgaaatttggctcagttgtggttatga |
37831168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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