View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5984_low_3 (Length: 776)
Name: NF5984_low_3
Description: NF5984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5984_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 1e-77; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 542 - 755
Target Start/End: Complemental strand, 9858243 - 9858014
Alignment:
| Q |
542 |
tttaaaaaatagtttgtatagaaaaggtctttcaccttatataattacaaaataatagctaattgaattagatacctaatcaacaactttcaagtgtcta |
641 |
Q |
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| T |
9858243 |
tttaaaaaatagtttgtatagaaaaggtctttcaccttatataattacaaaataataactaattgaagtagatacctaatcaacaactttgaagtgtcta |
9858144 |
T |
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| Q |
642 |
atttgacatctgtcacataa---------------cctctaataaaaactgaatgtaagttacccaagtaaccatgtaataaatacatggtttcaatatt |
726 |
Q |
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| T |
9858143 |
atttgacatctgtcacataacctcctatcatataacctctaataaaaactgaatgtaagttacccaagtaaccatgtaataaatacatggtttcaatatt |
9858044 |
T |
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| Q |
727 |
ttcatcat-cttcattttgaatagttcata |
755 |
Q |
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| T |
9858043 |
ttcatcatccttcgtcttaaatagttcata |
9858014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 9859519 - 9859362
Alignment:
| Q |
18 |
attaggtatggtgaaactaaacttttggtaccattgtctagaggcttgcctaagaccatataaagatttgtttaatttacaaacaaggttctcccccttg |
117 |
Q |
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| T |
9859519 |
attaggtatggtgaaactaaacttttggtaccattgtctagagacttgcctaagaccatataaagatttgtttaatttacaaacaaggttctccccc-tg |
9859421 |
T |
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| Q |
118 |
actggataacctttaggtaaatgcatatacacttcctcaaataaatcaccattaaaaaa |
176 |
Q |
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| T |
9859420 |
actgaataacctttaggtaaatgcatatacacttcctcaaataaatcaccattaaaaaa |
9859362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 372 - 550
Target Start/End: Complemental strand, 9858846 - 9858655
Alignment:
| Q |
372 |
aatatcttgggatattcaaaatatgttgatgcttcctttaaactatagagttttgttgtggcctatgtggacaagagaattgatgtaaaactccaagttc |
471 |
Q |
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| T |
9858846 |
aatatcttgggatattcaaaatatgttgatgcttcctttaaacta--gagttttgttgtgacctatgtggacaagagaattgatgtaaaactcccagttc |
9858749 |
T |
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| Q |
472 |
ctgcaaaa---------------aactcctttgcattgtcagtgtgaattgccttgatagtgatattaaattgagttttaatgaatttaaaaaa |
550 |
Q |
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| T |
9858748 |
ctgcaaaaaaagaagttaactgtaactcctttgcattgtcagtgtgaattgccttgatagtgatattaaattgagttttaatgaatttaaaaaa |
9858655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 174 - 265
Target Start/End: Complemental strand, 9858968 - 9858877
Alignment:
| Q |
174 |
aaacaatcataggaaatgtgattttgaatgggatattttacattgcactgatagttatcaagagttgacagagttctacagattctggttga |
265 |
Q |
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| T |
9858968 |
aaacaatcataggaaatgtgattttgaatgggatattttacattgcactgatagttatcaagagttgacagaggtctacagattctggttga |
9858877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 613 - 707
Target Start/End: Original strand, 9859511 - 9859599
Alignment:
| Q |
613 |
atacctaatca-acaactttcaagtgtctaatttgacatctgtcacataacctctaataaaaactgaatgtaagttacccaagtaaccatgtaata |
707 |
Q |
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| T |
9859511 |
atacctaatcacacaactgtcaagtgtctaatttgacat-------ataacctctaataaaacctgaatgtaagttacccaagtaaccatgtaata |
9859599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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