View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5984_low_4 (Length: 749)
Name: NF5984_low_4
Description: NF5984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5984_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 93 - 499
Target Start/End: Original strand, 8131773 - 8132179
Alignment:
| Q |
93 |
tggaaggaatcgtccacttcctcattgcaatgacagtgtaaacaatttcgagaaggttctaacagaacgtttggtttagaatgaagattgatttcgttac |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
8131773 |
tggaaggaatcgtccacttcctcattgcaatgacagtgtaaacaatttcgagaaggttctaacagaacgtttagtttagaatgaagattgatttcgttac |
8131872 |
T |
|
| Q |
193 |
tacacttcctgagtatatatactctctcggattttgtatttgtgacctgaattttaatttattttccttgctgggacgaagcatgggagcggtttgattt |
292 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8131873 |
tacacttcttgagtatatatactctctcggattttgtatttgtgacctgaattttaatttattttccttgctgggacgaagcatgggagcggttggattt |
8131972 |
T |
|
| Q |
293 |
gccagcgtggatgatctgacggttaaggaggcttttagtgcaacgtggcgttgattaattggtttgatctagttgcttcgacgtggagatgttaagtgag |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8131973 |
gccagcgtggatgatctgacggttaaggagggtttcagtgcaacgtggcgttgattaattggtttgatctagttgcttcgacgtggagatgttaagtgag |
8132072 |
T |
|
| Q |
393 |
ttaagtgtcactatgtaatggatggacccacatggacgacttggaattttcaagtccaccattgccgtttgtgatacttctgattatgtgacaaggatga |
492 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8132073 |
ttaagtgtcactatgtaatggatggacccacatggacgacttggaattttcaagtccaccattgccgtttgtgatacttctgattatgtgacaaggatga |
8132172 |
T |
|
| Q |
493 |
tattcat |
499 |
Q |
| |
|
||||||| |
|
|
| T |
8132173 |
tattcat |
8132179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 491 - 734
Target Start/End: Original strand, 8133312 - 8133543
Alignment:
| Q |
491 |
gatattcattggttatannnnnnngctttctacgtggaatgatattcattggttatagtcaatgatatttgattaaggtgtcttctctaaatctatgcga |
590 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
8133312 |
gatattcattggttatatttttttgctttctacgtggaatgatattcattggttatagtcaatgatatttgattaaggtgtct--------tctatgcga |
8133403 |
T |
|
| Q |
591 |
attgagggtgtcttagt-aatgtaatttgttatggggtttggtgtgtggatcatactttatttaagattggacgtcagttttttgacttaannnnnnnnn |
689 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| | |||| ||||||||||||||| | ||||||||| ||||||||| |
|
|
| T |
8133404 |
attgagggtgtcttagtaaatgtaatttgttatggggtttggtgtatcgatcgtactttatttaagatccg-cgtcagtttcttgacttaa----atttt |
8133498 |
T |
|
| Q |
690 |
nnngacttgttttgatgttttctccaatagaccgaggattaattg |
734 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
8133499 |
tttgacttgttttgatgtcttctccaataaaccgaggattaattg |
8133543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University