View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5984_low_6 (Length: 536)
Name: NF5984_low_6
Description: NF5984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5984_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 18 - 526
Target Start/End: Original strand, 9963272 - 9963780
Alignment:
| Q |
18 |
gataactcacctgttaatttgttgaaattatcagcaacagtttcaatctgcatgagaattgaaaatttgcttccattagaacaatcttcgagcagagttt |
117 |
Q |
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| T |
9963272 |
gataattcacctgttaatttgttgaaattatcagcaacagtttcaatctgcatgagaattgaaaatttgcttccattagaacaatcttcaagcagagttt |
9963371 |
T |
|
| Q |
118 |
taatcctatgaagcacaatatacatttcttcaagacaaagaacataagaattttgacgagttgaattcgaagatgaaactgaattacgaattaggtcatc |
217 |
Q |
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| T |
9963372 |
taaccctatgaagcacaatatacatttcttcaagacaaagaacataagaattttgacgagttgaattcgaagatgaaactgaattgcgaattaggtcatc |
9963471 |
T |
|
| Q |
218 |
gaaaacgacaccgaggaggtgcgttttacgtatagtggaagaagaaattttgtttaaaaggaaacgacaccatggagctgcgtttaaggaacatatttgg |
317 |
Q |
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| T |
9963472 |
gaaaacgacaccgagaaggtgcgttttacgtatagtggaagaagaaattttgtttaaaaggaaacgacaccatggagctgcgtttaaggaacatatttgg |
9963571 |
T |
|
| Q |
318 |
tttgtgaggtgtaaaagagaatggaggaggttaaagttagtgatatttggggtaataaacgacgacgtttctgatgatggtggtttagtagttgggaatg |
417 |
Q |
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| T |
9963572 |
tttgtgaggtgtaaaagagaatggaggaggttaaagttagtgatatttggggtaataaacgacgacgtttctgatgatggtggtttagtagttgggaatg |
9963671 |
T |
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| Q |
418 |
tttgaggtgatattgccatattttttggtaattgatgattggaagaacttatgggtatgaaagaattatcataagaaaatgaagcatgatgaagaagatg |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||| |||||||||| |
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| T |
9963672 |
tttgaggtgatattgccatattttttggtaattgatgattggaagaacttaagggtatgaaagaattattagaagaaaatgaagcatgaagaagaagatg |
9963771 |
T |
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| Q |
518 |
atgatgatg |
526 |
Q |
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| T |
9963772 |
atggtgatg |
9963780 |
T |
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