View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5984_low_7 (Length: 528)

Name: NF5984_low_7
Description: NF5984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5984_low_7
NF5984_low_7
[»] chr1 (1 HSPs)
chr1 (19-520)||(31228347-31228851)


Alignment Details
Target: chr1 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 19 - 520
Target Start/End: Original strand, 31228347 - 31228851
Alignment:
Q  19 ctttttgtttttatgatgcaagcaaaatcaagtcatttcagtaatcaaagtatgggtaatacaattcagtgcatgaaactgtgtgaggagcgta--agat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||    
T  31228347 ctttttgtttttatgatgcaagcaaaatcaagtcatttcagtaatcaaagtatgggtaatacaattcagtgcatgaaactgtgtgaggagcatataagat 31228446  T
Q  117 agagaagcttgtgttgagagtgtgaactctactatttgcttgttgcctaggatcaaaccgtataccaaactgttgtgaatttctttgtca-cgtcatgca 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31228447 agagaagcttgtgttgagagtgtgaactctactatttgcttgttgcctaggatcaaaccgtataccaaactgttgtgaatttctttgtcagcgtcatgca 31228546  T
Q  216 cgacttgtttgctattcatctcgaaaatcacattttgcaatcccgccgattctatccatgccattgattgaattaaagctcaagcttcaccttcagctac 315  Q
    |||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  31228547 cgacctgtttgctattcatctcgaaaatcacattttgcagtcccaccgattctatccatgccattgcttgaattaaacctcaagcttcaccttcagctac 31228646  T
Q  316 acgctcgcggagcaccaatttgttttggctacaatgaatttaccatagtcatcccttgcacacatgccaacacataaacactgctcatccgcaaaaaatg 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31228647 acgctcgcggagcaccaatttgttttggctacaatgaatttaccatagtcatcccttgcacacatgccaacacataaacactgctcatccgcaaaaaatg 31228746  T
Q  416 cagcatccagactgcattttacataactggtaggtagaggtatccaattttctgtcatgcgaacttctggctggtctgctccagctgatacacgctgcct 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31228747 cagcatccagactgcattttacataactggtaggtagaggtatccaattttctgtcatgcgaacttctggctggtctgctccagctgatacacgctgcct 31228846  T
Q  516 atgct 520  Q
     ||||    
T  31228847 gtgct 31228851  T

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