View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5986_low_2 (Length: 261)
Name: NF5986_low_2
Description: NF5986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5986_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 20 - 243
Target Start/End: Complemental strand, 12785771 - 12785548
Alignment:
| Q |
20 |
agtacataggaggtggaagtttagaagaactagtaaccgatacaaaaaatttaacctataaaaggcgcttagaagttgcgatcgacgtggctaaagcatt |
119 |
Q |
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| T |
12785771 |
agtacataggaggtggaagtttagaagaactagtaaccgatacaaaaaatttaacctataaaaggcgcttagaagtcgcgatcgacgtggctaaagcatt |
12785672 |
T |
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| Q |
120 |
ggtttatctacaccatgaatgttaccctccaatagttcatagagacgtgaaggctagtaatgtgttacttgacaaagaaggtaaagcaaaggtaactgat |
219 |
Q |
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| T |
12785671 |
ggtttatctacaccatgaatgttaccctccaatagttcatagggatgtgaaggctagtaatgtgttgcttgacaaagaaggtaaagcaaaggtaactgat |
12785572 |
T |
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| Q |
220 |
ttcggacttgcaagaattgtcgat |
243 |
Q |
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| T |
12785571 |
ttcggacttgctagaatcgtcgat |
12785548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 128 - 221
Target Start/End: Original strand, 45298863 - 45298956
Alignment:
| Q |
128 |
tacaccatgaatgttaccctccaatagttcatagagacgtgaaggctagtaatgtgttacttgacaaagaaggtaaagcaaaggtaactgattt |
221 |
Q |
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| T |
45298863 |
tacatcatgaatgttatccttctattgtccatagagatgtgaaggctagtaatgtgatgctagacaaagaagggaaagcaaaagtaacagattt |
45298956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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