View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5987_high_10 (Length: 423)

Name: NF5987_high_10
Description: NF5987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5987_high_10
NF5987_high_10
[»] chr6 (2 HSPs)
chr6 (20-411)||(19007705-19008097)
chr6 (169-260)||(11233820-11233909)
[»] chr4 (3 HSPs)
chr4 (169-260)||(723838-723929)
chr4 (340-383)||(36542220-36542264)
chr4 (340-383)||(36542620-36542664)
[»] chr7 (1 HSPs)
chr7 (207-285)||(18308325-18308403)
[»] chr8 (3 HSPs)
chr8 (351-384)||(36282981-36283014)
chr8 (340-373)||(24116645-24116678)
chr8 (169-260)||(25556732-25556823)
[»] scaffold0023 (1 HSPs)
scaffold0023 (169-248)||(148402-148480)
[»] chr5 (2 HSPs)
chr5 (169-248)||(38838702-38838780)
chr5 (169-260)||(40934837-40934926)
[»] chr3 (1 HSPs)
chr3 (169-261)||(18558814-18558904)


Alignment Details
Target: chr6 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 20 - 411
Target Start/End: Original strand, 19007705 - 19008097
Alignment:
Q  20 atcaattatagaatatcataagagatttggaatttaaagcttttaattcaaagctactcatcctgctattatagagatgaaaacaactaggttccaaacg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19007705 atcaattatagaatatcataagagatttggaatttaaagcttttaattcaaagctactcatcctgctattatagagatgaaaacaactaggttccaaacg 19007804  T
Q  120 caattttataaacttcatgtataataataacaagggtcaccttacatatttattatccacagattatgtgtatgcaccaacaattagttgcaaaataaac 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  19007805 caattttataaacttcatgtataataataacaagggtcaccttacatatttattatccacagattatgtgtatgcacccacaattagttgcaaaataaac 19007904  T
Q  220 caaaaccgataagagccttggaaattaaagttgtaaaatattgtcttgaaatatttttaccaaaacatttcttcaaaccaaaatattttctcaaaatata 319  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19007905 caaaaccgataagagccttggagattaaagttgtaaaatattgtcttgaaatatttttaccaaaacatttcttcaaaccaaaatattttctcaaaatata 19008004  T
Q  320 tc-ggcgatagattttcatcgaatatattgggcaaaataatttcttcaaatcaaaagtgtaaatacgttaagaaataatgttcttatgtgatg 411  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  19008005 tcaggcgatagattttcatcgaatatattgggcaaaataatttcttcaaatcaaaagtgaaaatacgttaagaaataatgttcttatgtgatg 19008097  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 169 - 260
Target Start/End: Complemental strand, 11233909 - 11233820
Alignment:
Q  169 ttattatccacagattatgtgtatgcaccaacaattagttgcaaaataaaccaaaaccgataagagccttggaaattaaagttgtaaaatat 260  Q
    |||||||||||| || |||| |||||||||| || || |||||| ||||| ||||| ||||||||| ||| |||||| |||||| |||||||    
T  11233909 ttattatccacatatgatgtatatgcaccaaaaaataattgcaacataaa-caaaatcgataagagacttcgaaatt-aagttgcaaaatat 11233820  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 169 - 260
Target Start/End: Complemental strand, 723929 - 723838
Alignment:
Q  169 ttattatccacagattatgtgtatgcaccaacaat-tagttgcaaaataaaccaaaaccgataagagccttggaaattaaagttgtaaaatat 260  Q
    |||||||||||| || |||| |||||||||||||  || ||||||||||||| ||||  |||||||| ||| |||||||| ||||||||||||    
T  723929 ttattatccacatatgatgtatatgcaccaacaaaataattgcaaaataaac-aaaattgataagagacttcgaaattaaggttgtaaaatat 723838  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 383
Target Start/End: Original strand, 36542220 - 36542264
Alignment:
Q  340 aatatattgggcaaaataatttcttcaaatc-aaaagtgtaaata 383  Q
    ||||||||| |||||| |||||||||||||| |||||||||||||    
T  36542220 aatatattgagcaaaaaaatttcttcaaatcaaaaagtgtaaata 36542264  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 383
Target Start/End: Original strand, 36542620 - 36542664
Alignment:
Q  340 aatatattgggcaaaataatttcttcaaat-caaaagtgtaaata 383  Q
    ||||||||| ||||||||||||||||||||  |||||||||||||    
T  36542620 aatatattgagcaaaataatttcttcaaataaaaaagtgtaaata 36542664  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 207 - 285
Target Start/End: Complemental strand, 18308403 - 18308325
Alignment:
Q  207 ttgcaaaataaaccaaaaccgataagagccttggaaattaaagttgt-aaaatattgtcttgaaatatttttaccaaaac 285  Q
    ||||||||||||| |||| |||||||||||||  ||||||||||||| |||||||||| | |||||||||| | ||||||    
T  18308403 ttgcaaaataaac-aaaatcgataagagccttcaaaattaaagttgtaaaaatattgtatcgaaatattttaagcaaaac 18308325  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 351 - 384
Target Start/End: Original strand, 36282981 - 36283014
Alignment:
Q  351 caaaataatttcttcaaatcaaaagtgtaaatac 384  Q
    ||||||||||||||||||||||||||||||||||    
T  36282981 caaaataatttcttcaaatcaaaagtgtaaatac 36283014  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 373
Target Start/End: Complemental strand, 24116678 - 24116645
Alignment:
Q  340 aatatattgggcaaaataatttcttcaaatcaaa 373  Q
    |||||||||||||||| |||||||||||||||||    
T  24116678 aatatattgggcaaaaaaatttcttcaaatcaaa 24116645  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 260
Target Start/End: Complemental strand, 25556823 - 25556732
Alignment:
Q  169 ttattatccacagattatgtgtatgcaccaac-aattagttgcaaaataaaccaaaaccgataagagccttggaaattaaagttgtaaaatat 260  Q
    |||||||||||| || |||| ||||||||||| || || |||||| ||||| |||||  |||||||| ||  |||||||| ||||||||||||    
T  25556823 ttattatccacatatgatgtatatgcaccaacaaaataattgcaagataaa-caaaattgataagagactccgaaattaaggttgtaaaatat 25556732  T

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Target: scaffold0023 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 169 - 248
Target Start/End: Complemental strand, 148480 - 148402
Alignment:
Q  169 ttattatccacagattatgtgtatgcaccaacaattagttgcaaaataaaccaaaaccgataagagccttggaaattaaa 248  Q
    |||||||||||| || |||| |||||||||| || || |||||| ||||| ||||| ||||||||| ||| |||||||||    
T  148480 ttattatccacatatgatgtatatgcaccaaaaaataattgcaacataaa-caaaatcgataagagacttcgaaattaaa 148402  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 169 - 248
Target Start/End: Complemental strand, 38838780 - 38838702
Alignment:
Q  169 ttattatccacagattatgtgtatgcaccaacaattagttgcaaaataaaccaaaaccgataagagccttggaaattaaa 248  Q
    |||||||||||| || |||| |||||||||| || || |||||| ||||| ||||| ||||||||| ||| |||||||||    
T  38838780 ttattatccacatatgatgtatatgcaccaaaaaataattgcaacataaa-caaaatcgataagagacttcgaaattaaa 38838702  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 169 - 260
Target Start/End: Complemental strand, 40934926 - 40934837
Alignment:
Q  169 ttattatccacagattatgtgtatgcaccaacaattagttgcaaaataaaccaaaaccgataagagccttggaaattaaagttgtaaaatat 260  Q
    |||||||||||| || |||| |||||||||| || || |||||| ||||| ||||| ||||||||| ||| |||||| |||||| |||||||    
T  40934926 ttattatccacatatgatgtatatgcaccaaaaaataattgcaacataaa-caaaatcgataagagacttcgaaatt-aagttgcaaaatat 40934837  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 261
Target Start/End: Complemental strand, 18558904 - 18558814
Alignment:
Q  169 ttattatccacagattatgtgtatgcaccaacaattagttgcaaaataaaccaaaaccgataagagccttggaaattaaagttgtaaaatatt 261  Q
    ||||||||||||  | |||| |||||||||| || || |||||| ||||| ||||| ||||||||| ||| |||||| |||||| ||||||||    
T  18558904 ttattatccacatgtgatgtatatgcaccaaaaaataattgcaacataaa-caaaatcgataagagacttcgaaatt-aagttgcaaaatatt 18558814  T

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