View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5987_high_14 (Length: 363)
Name: NF5987_high_14
Description: NF5987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5987_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 6 - 348
Target Start/End: Original strand, 44142255 - 44142597
Alignment:
| Q |
6 |
tggacatcatcaaagataagggtaaggagaaaaaggtaggaaatggggtgaattatgtctccctgagggatcactggtgaatgaactgtgaagaattaaa |
105 |
Q |
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|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
44142255 |
tggaaatcataaaagataagggtaaggagaaaaaggtaggaaatggggtgaattatgtctccctgagggatcagtggtgagtgaactgtgaagaattaaa |
44142354 |
T |
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| Q |
106 |
caaaaatagccaaaggcatggctcagagtttcatttggtatggaaaaactgtagtaagaaaataaattaataaaactatgttcagagtaaatgaaatttg |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
44142355 |
caaaaatagccaaaggcatggctcagagtttcatttggtatggaaaaactgtagtaagaaaataaattaataaaaccatgttcagagtaaatgaaatttg |
44142454 |
T |
|
| Q |
206 |
cacccagaaaacaaagtggagctatgtaaattctttacagccctaataaaaccataaatccaagttctaaaataattttgactcccaaaattgaaaccaa |
305 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44142455 |
cacccagaaaacaaagtggagctatgtaaattctttatagccctaataaaaccataaatccaagttctaaaataattttgactcccaaaattgaaaccaa |
44142554 |
T |
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| Q |
306 |
acatatgtttattcatactaacttatacattacattataaact |
348 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
44142555 |
acatatgtttattcatactaacttatacattacataataaact |
44142597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 332
Target Start/End: Original strand, 44121691 - 44121733
Alignment:
| Q |
290 |
ccaaaattgaaaccaaacatatgtttattcatactaacttata |
332 |
Q |
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| T |
44121691 |
ccaaaattaaaaccaaacatatgcttattcatgctaacttata |
44121733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 6 - 348
Target Start/End: Original strand, 50062907 - 50063260
Alignment:
| Q |
6 |
tggacatcatcaaagataagggtaaggagaaaaaggtaggaaatggggtgaattatg-----------tctccctgagggatcactggtgaatgaactgt |
94 |
Q |
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|||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||| |||||| |||||| | |
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| T |
50062907 |
tggaaatcataaaagataagggtaaggagaaaaaggttggaaatggggtgaattatgaagtgtggacgtcaccctgagggatcagtggtgagtgaactat |
50063006 |
T |
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| Q |
95 |
gaagaattaaacaaaaatagccaaaggcatggctcagagtttcatttggtatggaaaaactgtagtaagaaaataaattaataaaactatgttcagagta |
194 |
Q |
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| T |
50063007 |
gaagaattaaacaaaaatagccaaaggcatggctcagagtttcatttggtatggaaaaactgtagtaagaaaataaattaataaaactatgttcagagta |
50063106 |
T |
|
| Q |
195 |
aatgaaatttgcacccagaaaacaaagtggagctatgtaaattctttacagccctaataaaaccataaatccaagttctaaaataattttgactcccaaa |
294 |
Q |
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| T |
50063107 |
aatgaaatttgcacccagaaaacaaagtggagctatggaaattctttacagccctaataaaaccataaatccaagttctaaaataattttgactcccaaa |
50063206 |
T |
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| Q |
295 |
attgaaaccaaacatatgtttattcatactaacttatacattacattataaact |
348 |
Q |
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|||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
50063207 |
attgaaaccaaacataggcttattcatactaacttatacattacattataaact |
50063260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 332
Target Start/End: Original strand, 50024351 - 50024393
Alignment:
| Q |
290 |
ccaaaattgaaaccaaacatatgtttattcatactaacttata |
332 |
Q |
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|||||||| |||||||||||||| |||||||| |||||||||| |
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| T |
50024351 |
ccaaaattaaaaccaaacatatgcttattcatgctaacttata |
50024393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 332
Target Start/End: Original strand, 50031469 - 50031511
Alignment:
| Q |
290 |
ccaaaattgaaaccaaacatatgtttattcatactaacttata |
332 |
Q |
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|||||||| |||||||||||||| |||||||| |||||||||| |
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| T |
50031469 |
ccaaaattaaaaccaaacatatgcttattcatgctaacttata |
50031511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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