View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5987_high_25 (Length: 240)

Name: NF5987_high_25
Description: NF5987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5987_high_25
NF5987_high_25
[»] chr3 (3 HSPs)
chr3 (1-234)||(36072368-36072591)
chr3 (25-84)||(26719899-26719958)
chr3 (40-72)||(24985484-24985516)
[»] chr1 (3 HSPs)
chr1 (1-117)||(42624959-42625075)
chr1 (22-99)||(2549144-2549220)
chr1 (40-122)||(24477799-24477881)
[»] scaffold0027 (1 HSPs)
scaffold0027 (29-94)||(1507-1572)
[»] chr4 (7 HSPs)
chr4 (1-86)||(47261190-47261275)
chr4 (22-83)||(42097471-42097532)
chr4 (21-91)||(25577805-25577874)
chr4 (26-72)||(29010681-29010727)
chr4 (24-69)||(965424-965469)
chr4 (25-82)||(21305176-21305233)
chr4 (22-86)||(16972465-16972529)
[»] chr8 (2 HSPs)
chr8 (22-94)||(32240568-32240640)
chr8 (40-139)||(30188338-30188437)
[»] scaffold0362 (1 HSPs)
scaffold0362 (40-86)||(10392-10438)
[»] chr7 (1 HSPs)
chr7 (22-138)||(35432978-35433094)


Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 36072368 - 36072591
Alignment:
Q  1 atgaacaaatctcatcaagatagcgtctaacttgatcgatcccttcgaactatactgaccaaatatagagaaaatgattctcacattgtcgttgctctat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36072368 atgaacaaatctcatcaagatagcgtctaacttgatcgatcccttcgaactatactgaccaaatatagagaaaatgattctcacattgtcgttgctctat 36072467  T
Q  101 aatttcatctgggtgaatcgaatgcgtcgatcttagtcgatcgaatgacaatgattctcaacactaaccatccttcttatgtcgccgtgctttagtctaa 200  Q
    |||||||||||||||||||||||||          |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  36072468 aatttcatctgggtgaatcgaatgc----------gtcgatcgaacgacaatgattctcaacactaaccatccttcttatgtcgtcgtgctttagtctaa 36072557  T
Q  201 ttgatccttcaagtcagacattgtaatatcaaca 234  Q
    ||||||||||||||||||||||||||||||||||    
T  36072558 ttgatccttcaagtcagacattgtaatatcaaca 36072591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 26719958 - 26719899
Alignment:
Q  25 gtctaacttgatcgatcccttcgaactatactgaccaaatatagagaaaatgattctcac 84  Q
    |||||||||||| | |||||| |||||||||||||||||||||||||| |||||||||||    
T  26719958 gtctaacttgattgctccctttgaactatactgaccaaatatagagaacatgattctcac 26719899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 24985516 - 24985484
Alignment:
Q  40 tcccttcgaactatactgaccaaatatagagaa 72  Q
    ||||||||||||||| |||||||||||||||||    
T  24985516 tcccttcgaactatattgaccaaatatagagaa 24985484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 42625075 - 42624959
Alignment:
Q  1 atgaacaaatctcatcaagatagcgtctaacttgatcgatcccttcgaactatactgaccaaatatagagaaaatgattctcacattgtcgttgctctat 100  Q
    ||||||| |||||| |||| ||||||||||||  ||| ||| |||||||||||||| || ||||||||| |  |||||| |||||||||||| | |||      
T  42625075 atgaacatatctcagcaaggtagcgtctaactcaatcaatctcttcgaactatacttacaaaatatagatagcatgattttcacattgtcgtcgttctgg 42624976  T
Q  101 aatttcatctgggtgaa 117  Q
    | ||||||| |||||||    
T  42624975 agtttcatcagggtgaa 42624959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 2549144 - 2549220
Alignment:
Q  22 agcgtctaacttgatcgatcccttcgaactatactgaccaaatatagagaaaatgattctcacattgtcgttgctcta 99  Q
    ||||||||||| || || ||||||||||||| |||||  |||||||||||| ||| ||||||| ||||||||| ||||    
T  2549144 agcgtctaactcgaccggtcccttcgaactacactgataaaatatagagaacatg-ttctcacgttgtcgttgttcta 2549220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 122
Target Start/End: Complemental strand, 24477881 - 24477799
Alignment:
Q  40 tcccttcgaactatactgaccaaatatagagaaaatgattctcacattgtcgttgctctataatttcatctgggtgaatcgaa 122  Q
    ||||||| ||||  ||||| ||||||||| ||| ||||||||||||||||||| | |||| |  |||| || |||||||||||    
T  24477881 tcccttcaaactccactgatcaaatatagggaacatgattctcacattgtcgtcgttctagagcttcacctaggtgaatcgaa 24477799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 1572 - 1507
Alignment:
Q  29 aacttgatcgatcccttcgaactatactgaccaaatatagagaaaatgattctcacattgtcgttg 94  Q
    |||| |||||||||| | |||||||| ||||||||||||||||| ||| |||||||||||| ||||    
T  1572 aactcgatcgatcccattgaactatagtgaccaaatatagagaacatggttctcacattgttgttg 1507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 47261190 - 47261275
Alignment:
Q  1 atgaacaaatctcatcaagatagcgtctaacttgatcgatcccttcgaactatactgaccaaatatagagaaaatgattctcacat 86  Q
    ||||||||||||||   ||  ||||||||||||||||| ||| || |||||||||||| |||||||| |||| ||| |||||||||    
T  47261190 atgaacaaatctcacagaggaagcgtctaacttgatcggtccatttgaactatactgatcaaatataaagaacatggttctcacat 47261275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 42097532 - 42097471
Alignment:
Q  22 agcgtctaacttgatcgatcccttcgaactatactgaccaaatatagagaaaatgattctca 83  Q
    |||||||||||  ||||||||||||||||||| ||||| |||||||||| | ||| ||||||    
T  42097532 agcgtctaactccatcgatcccttcgaactatcctgactaaatatagaggacatggttctca 42097471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 25577805 - 25577874
Alignment:
Q  21 tagcgtctaacttgatcgatcccttcgaactatactgaccaaatatagagaaaatgattctcacattgtcg 91  Q
    |||||||||| ||||||| ||| || ||||||||||| |||||| ||||||| |  |||||||||||||||    
T  25577805 tagcgtctaatttgatcggtccttt-gaactatactggccaaatgtagagaacacaattctcacattgtcg 25577874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 29010681 - 29010727
Alignment:
Q  26 tctaacttgatcgatcccttcgaactatactgaccaaatatagagaa 72  Q
    |||||||  ||| |||||||||||||||||||| |||||||||||||    
T  29010681 tctaactcaatccatcccttcgaactatactgatcaaatatagagaa 29010727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 965469 - 965424
Alignment:
Q  24 cgtctaacttgatcgatcccttcgaactatactgaccaaatataga 69  Q
    ||||||||||||||| ||||||| ||||||||| || |||||||||    
T  965469 cgtctaacttgatcggtcccttcaaactatactaactaaatataga 965424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 21305233 - 21305176
Alignment:
Q  25 gtctaacttgatcgatcccttcgaactatactgaccaaatatagagaaaatgattctc 82  Q
    |||||||| ||||  || |||||||||||| ||||||||||||||||| |||| ||||    
T  21305233 gtctaactcgatcagtctcttcgaactatattgaccaaatatagagaacatgactctc 21305176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 16972465 - 16972529
Alignment:
Q  22 agcgtctaacttgatcgatcccttcgaactatactgaccaaatatagagaaaatgattctcacat 86  Q
    |||||||||||  | |||||||||| ||||||   |||||||||||||||| ||| |||||||||    
T  16972465 agcgtctaactcaaccgatcccttcaaactatgtcgaccaaatatagagaacatggttctcacat 16972529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 32240640 - 32240568
Alignment:
Q  22 agcgtctaacttgatcgatcccttcgaactatactgaccaaatatagagaaaatgattctcacattgtcgttg 94  Q
    |||||||||||  |||| |||||| |||||||||||| ||||||||||||| ||| ||||||  |||||||||    
T  32240640 agcgtctaactcaatcggtccctttgaactatactgaacaaatatagagaatatggttctcatgttgtcgttg 32240568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 139
Target Start/End: Complemental strand, 30188437 - 30188338
Alignment:
Q  40 tcccttcgaactatactgaccaaatatagagaaaatgattctcacattgtcgttgctctataatttcatctgggtgaatcgaatgcgtcgatcttagtcg 139  Q
    ||||||||||||||| ||| |||||||| |||||||| |||||| || ||||||| | |  | |||||||| ||| |||||||  ||||||||| |||||    
T  30188437 tcccttcgaactatattgatcaaatataaagaaaatggttctcatatcgtcgttgttttgaagtttcatctaggtaaatcgaacacgtcgatctgagtcg 30188338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0362 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 10392 - 10438
Alignment:
Q  40 tcccttcgaactatactgaccaaatatagagaaaatgattctcacat 86  Q
    |||||| |||||||||||||||||||||||||| |||||||| ||||    
T  10392 tccctttgaactatactgaccaaatatagagaacatgattcttacat 10438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 138
Target Start/End: Original strand, 35432978 - 35433094
Alignment:
Q  22 agcgtctaacttgatcgatcccttcgaactatactgaccaaatatagagaaaatgattctcacattgtcgttgctctataatttcatctgggtgaatcga 121  Q
    ||||||||||||||||| |   ||| ||||||||| ||||||||||||||| ||| | ||||| | ||||||| |||| |  ||||| |||||||| | |    
T  35432978 agcgtctaacttgatcggttgattcaaactatacttaccaaatatagagaacatggtactcacgtcgtcgttgttctaaagattcatttgggtgaaccta 35433077  T
Q  122 atgcgtcgatcttagtc 138  Q
    | ||||| |||| ||||    
T  35433078 acgcgtcaatctaagtc 35433094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University