View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5987_high_28 (Length: 210)
Name: NF5987_high_28
Description: NF5987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5987_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 52289164 - 52289345
Alignment:
| Q |
19 |
ttactagtgcaagtactaaaaatccacgaaagtcccacaatctactcaagatattattaagattaattgctttagcaatcaaccatatccgtgcaacttt |
118 |
Q |
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| T |
52289164 |
ttactagtgcaagtactaaaaatccacgatagtcccacaatctactcaagatattattaagattaattgctttagcaatcaaccatatccttgcaacttt |
52289263 |
T |
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| Q |
119 |
ttgtcacataatttttcttcaatggtgaactgaaggacacactttttgaacttaagactctccaagacttctgttgatgatg |
200 |
Q |
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| T |
52289264 |
ttgtcacataatttttcttcaatggtgaactgaaggacacactttttgaacttaagactctccaagacttctgttgatgatg |
52289345 |
T |
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