View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5987_high_5 (Length: 636)
Name: NF5987_high_5
Description: NF5987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5987_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 154; Significance: 2e-81; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 9 - 210
Target Start/End: Original strand, 11812027 - 11812231
Alignment:
| Q |
9 |
attatactaaccagtgcgattaactaactaactagagtgagcaacgaactttaactcactaacaaactcaatttatattctaactattttaacaattttt |
108 |
Q |
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| T |
11812027 |
attatactaaccagtgcgattaactaactaactagagtgagtaaagaactttaactcactaactaactcaatttatattctaactattttaacaattttt |
11812126 |
T |
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| Q |
109 |
acaaaaaacaatactgtatgttttcgaactgaattgatttgttgtgtaataaaccataaaatttctgttaagataaaac--ctcc-aaaaaatacaccaa |
205 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||| |||| |||||||||||||| |
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| T |
11812127 |
acaaaaaacaaaactgtatgttttcgaactgaattgatttgttgtgtaatgaaccgtaaaatttatgttaagataaaacatctccgaaaaaatacaccaa |
11812226 |
T |
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| Q |
206 |
cataa |
210 |
Q |
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|||| |
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| T |
11812227 |
gataa |
11812231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 512 - 619
Target Start/End: Original strand, 11812499 - 11812606
Alignment:
| Q |
512 |
tatatatatcaacaacttatattataacctttcaagcctttcaaaacaaccgtttatgtattaaacatgacaaatatttatatgaaaatggttttttgaa |
611 |
Q |
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||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11812499 |
tatatatatcaacaacttatattgtaacctttgaagcctttcaaaacaaccgtttatgtattaaacatgacaaatatttatatgaaaatggttttttgaa |
11812598 |
T |
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| Q |
612 |
ttaaaaat |
619 |
Q |
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|||||||| |
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| T |
11812599 |
ttaaaaat |
11812606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 376 - 473
Target Start/End: Original strand, 11812343 - 11812440
Alignment:
| Q |
376 |
aaccaaagacaaaaatttaacaatttacannnnnnnnccgtatgataccaactctatgaattgaaccgcatgaaaaattgaaataactattatttgtc |
473 |
Q |
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| T |
11812343 |
aaccaaagacaaaaattaaacaatttacattttctttccgtatgataccaactctatgaattgaaccgcataaaaaattgaaataactattatttgtc |
11812440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 281 - 324
Target Start/End: Original strand, 11812302 - 11812345
Alignment:
| Q |
281 |
cactttaccaacatcttcactcataaacattttagagattgaac |
324 |
Q |
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| T |
11812302 |
cactttaccaacatcttcactcataaacattttagagattgaac |
11812345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 327 - 363
Target Start/End: Complemental strand, 26478739 - 26478703
Alignment:
| Q |
327 |
tccattgatagtgatcataagaaaaatctttaacttt |
363 |
Q |
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|||||||||||| ||||||||||||||| |||||||| |
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| T |
26478739 |
tccattgatagtaatcataagaaaaatcattaacttt |
26478703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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