View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5987_high_6 (Length: 536)
Name: NF5987_high_6
Description: NF5987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5987_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 19 - 525
Target Start/End: Complemental strand, 24508656 - 24508162
Alignment:
| Q |
19 |
gttgcacttggtcatgctcttggattcttcgtatgtagccgtgcttttaaagaaccacatcactatgtggcactttgagagagtcgacacaacatattat |
118 |
Q |
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| T |
24508656 |
gttgtacttggtcatgctcttggattcttcgtatgtagccgtgcttttaaagaaccacatcactatgtggcactttgagagagtcgacacaacatattac |
24508557 |
T |
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| Q |
119 |
taggcctaaagcgaacaataaattgaggcattttatgtaataaagactgacat-aaaagtcgtttttaaagttgaacaaaaataaaaattcaataaaata |
217 |
Q |
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| T |
24508556 |
taggcctaaagcgaacaataaattgaggcattttatgtaataaagactaacataaaaagtcgcttttaaagttgaacaaa-----------aataaaata |
24508468 |
T |
|
| Q |
218 |
ctgtttttatcaatgtggtatattttttaatttgaattaaaattaaaaaataattgtacatataagagtcnnnnnnnnacttaaagaacagacaaattta |
317 |
Q |
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| T |
24508467 |
ctgtttttatcaatgtggtatattttttaatttgaattaaaattgaaaaataattgtacatataagagtc--ttttttacttaaagaacagataaattta |
24508370 |
T |
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| Q |
318 |
tttaaaaataaagtctgacttttttcatgacnnnnnnnnggtcaagttttcatagcttttatattatgatattgataacactttactattgaaataaata |
417 |
Q |
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||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
24508369 |
tttaaaaataaagtctgacttttttcatgacttttttttgatcaagttttcatagcttttatattatgatatttataacactttattattgaaataaata |
24508270 |
T |
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| Q |
418 |
atannnnnnnattacaaaaaataataatataaatacttgcttataaaagcgacctttgaccgttatatcatctagacactctttctatctcaaaatctcc |
517 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
24508269 |
atatttttttattacaaaaaataataatataaatacttgcttataaaagcgacctttgaccgttatatcagctagacactctttctatctcaaaatctcc |
24508170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 24295777 - 24295735
Alignment:
| Q |
25 |
cttggtcatgctcttggattcttcgtatgtagccgtgctttta |
67 |
Q |
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|||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
24295777 |
cttggtcatgctcttggattcttcttatgtagcagtgctttta |
24295735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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