View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5987_high_7 (Length: 460)
Name: NF5987_high_7
Description: NF5987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5987_high_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 19 - 399
Target Start/End: Original strand, 36027069 - 36027449
Alignment:
| Q |
19 |
gcattcagaagatgcatcctttgctggtttagcagtgtgtaatgatttgatgctggtttatgtagccagctatatcaagccatattatcaaatatatcga |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36027069 |
gcattcagaagatgcatcctttgctggtttagcagtgtgtaatgatttgatactggtttatgtagccagctatatcaagccatattatcaaatatatcga |
36027168 |
T |
|
| Q |
119 |
gctggatctcttgtgggatctttctttttgcaatttgatacatacatctttaatattagttgatatttaagtgattgtgtacgttatatttttcacaatg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36027169 |
gctggatctcttgtgggatctttctttttgcaatttgatacatacatctttaatattagttgatatttaagtgattgtgtacgttatatttttcacaatg |
36027268 |
T |
|
| Q |
219 |
attgctggtaatgtggtgtggtgattttagttggtaaaagatatatctctgcacctctcatgaccagcgatattagtgcgtccaatcttaccctactcag |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
36027269 |
attgctggtaatgtggtgtggtgattttagttggtaaaagatatatctctgcacctctcatgaccagcgatattagtgcgtccaatcttaccctacccag |
36027368 |
T |
|
| Q |
319 |
atgatatctcttatttatcatatcatccctgtctaatttcagcaatgagtttgataaatatattattgtttgaaaacagtc |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36027369 |
atgatatctcttatttatcatatcatccctgtctaatttcagcaatgagtttgataaatatattattgtttgaaaacagtc |
36027449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 1e-60; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 207 - 395
Target Start/End: Complemental strand, 16931987 - 16931801
Alignment:
| Q |
207 |
tttttcacaatgattgctggtaatgtggtgtggtgattttagttggtaaaagatatatctctgcacctctcatgaccagcgatattagtgcgtccaatct |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16931987 |
tttttcacaatgattgctggtaatgtggtgtgatgattttagttgtttaaagatat--ctctgcacctctcatgaccagcgatattagtgcgtccaatct |
16931890 |
T |
|
| Q |
307 |
ta-ccctactcagatgatatctcttatttatcatatcatccctgtctaatttcagcaatgagtttgataaatatattattgtttgaaaac |
395 |
Q |
| |
|
|| |||||| | |||||| |||| || |||||||||||||||||||||| |||| | |||||||||||||||||| |||||||||||||| |
|
|
| T |
16931889 |
tacccctaccccgatgatttctcataattatcatatcatccctgtctaa-ttcaacgatgagtttgataaatataatattgtttgaaaac |
16931801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 63 - 189
Target Start/End: Complemental strand, 16932726 - 16932599
Alignment:
| Q |
63 |
atttgatgctggtttatgtagccagctatatcaagccatattatcaaatatatcgagctggatctcttgtgggatctttctttttgcaatttgataca-t |
161 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||| ||||||| ||||| | |
|
|
| T |
16932726 |
atttgatactggtttatgtggccagctatatcaagcaatattatcaaatatatcgagttggatctcttgtggaatctttcttttcgcaatttcatacatt |
16932627 |
T |
|
| Q |
162 |
acatctttaatattagttgatatttaag |
189 |
Q |
| |
|
|||| ||||||||||||||||||||||| |
|
|
| T |
16932626 |
acatttttaatattagttgatatttaag |
16932599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 16932812 - 16932767
Alignment:
| Q |
19 |
gcattcagaagatgcatcctttgctggtttagcagtgtgtaatgat |
64 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||| ||||| |
|
|
| T |
16932812 |
gcattcagaagattcatactttgctggtttagcagtgtgtcatgat |
16932767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University