View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5987_high_8 (Length: 441)
Name: NF5987_high_8
Description: NF5987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5987_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 83; Significance: 4e-39; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 335 - 425
Target Start/End: Original strand, 42845226 - 42845316
Alignment:
| Q |
335 |
gttaaatttcaattttctagagtttttcaatttatcaaaatcctgaaaagataggatcattctaagacaattatgcagaagtggaagatca |
425 |
Q |
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| T |
42845226 |
gttacatttcaattttctagagtttttcaatttatcaaaatcccgaaaagataggatcattctaagacaattatgcagaagtggaagatca |
42845316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 4 - 143
Target Start/End: Original strand, 42830390 - 42830530
Alignment:
| Q |
4 |
tataaacaggcttggggttgatgggacagatgaagacaaggccaaatggtgggaaaa-caagcatatgttttccgaggacaagcagagccattgatggca |
102 |
Q |
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| T |
42830390 |
tataaacagtcatggggttgatggaacagatgaagacaaggccaaatggtgggaaaatgaatgaaatgttttccaaagaagagcagaatcattgattaca |
42830489 |
T |
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| Q |
103 |
cggatacatattgtttaaggagacatatgcttttcgcgatg |
143 |
Q |
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| T |
42830490 |
cggatgcatcttgatcaaggagacagacgcttttcgcgatg |
42830530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 31759327 - 31759285
Alignment:
| Q |
16 |
tggggttgatgggacagatgaagacaaggccaaatggtgggaa |
58 |
Q |
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| T |
31759327 |
tggggttgatggaacaaatgaagacaaggccaaatggtgggaa |
31759285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 41978159 - 41978281
Alignment:
| Q |
1 |
ggatataaacaggcttggggttgatgggacagatgaagacaaggccaaatggtgggaaaa-caagcatatgttttccgaggacaagcagagccattgatg |
99 |
Q |
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| T |
41978159 |
ggatataaatagtcatggggttgatggaacagatgaagacaaggccaaatggtgggaaaatgaacgaaatgttttccgaggaagagcagagtcatttatt |
41978258 |
T |
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| Q |
100 |
gcacggatacatattgtttaagg |
122 |
Q |
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| T |
41978259 |
gcacggatgcatcttgttcaagg |
41978281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 204 - 322
Target Start/End: Original strand, 41979014 - 41979132
Alignment:
| Q |
204 |
aaaagatgaatgaaactgtaaactgccggaaccagctcaaagaaatactagggatcattgtacaatgcaatttgtcagtccagtgactagggatgggcaa |
303 |
Q |
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| T |
41979014 |
aaaagatgtatcaaattgtaaactgtcagaaccagctcaaagaaatattatggaacatggtacaatggaatttgttaatccattgactgggaaaggtcaa |
41979113 |
T |
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| Q |
304 |
gaaacttcatgtcatgggg |
322 |
Q |
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| T |
41979114 |
gaaaattcatgtcatgggg |
41979132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 403
Target Start/End: Original strand, 41979203 - 41979249
Alignment:
| Q |
357 |
tttttcaatttatcaaaatcctgaaaagataggatcattctaagaca |
403 |
Q |
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| T |
41979203 |
tttttcaattgatcaaaatcctgagaagataggatcattctcagaca |
41979249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 26749747 - 26749705
Alignment:
| Q |
16 |
tggggttgatgggacagatgaagacaaggccaaatggtgggaa |
58 |
Q |
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| T |
26749747 |
tggggttgatggaacagatgaagaaaaggccaaatggtgggaa |
26749705 |
T |
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