View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5987_low_1 (Length: 1210)
Name: NF5987_low_1
Description: NF5987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5987_low_1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 407; Significance: 0; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 704 - 1192
Target Start/End: Original strand, 49438075 - 49438570
Alignment:
| Q |
704 |
gatccctaaacttaacaaacctcatctagctcaaggttttcaagcttagggcaatgattgagcacttgcaccaacaaattccaattagagttgatagagt |
803 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49438075 |
gatccctaaacttaacaaacctcatctagctcaaggttttcaagcttagggcaatgattgagcacttgcaccaacaaattccaattagagttgatagagt |
49438174 |
T |
|
| Q |
804 |
gaagtttcaacttggtcagattatgaaaggtaggaatctcatcaaaacttcgatacatctaaaaacaagtaaacaacatagaaatatataccatca---- |
899 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49438175 |
gaagtttcaacttggtcagattatgaaaggtaggaatctcatcaaaacttcgatacatctaaaaacaagtaaacaacatagaaatatataccatcactca |
49438274 |
T |
|
| Q |
900 |
---gaaataaggtcaacattttcnnnnnnnnnnnnnnnnnnnnntcaacacatttcaccatcagtgtattcatatagcaataataaatttcaaaccttat |
996 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49438275 |
tcagaaataaggtcaacattttcaaaagaaaagcaaaaacaaaatcaacacatttcaccatcagtgtattcatatagcaataataaatttcaaaccttat |
49438374 |
T |
|
| Q |
997 |
ttagttctatgtgcagtttctccacattatgaagtgctttcaacggaaaatgacaataagtgtaaggcatttctgctttagtcaacttgcttaagcttaa |
1096 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49438375 |
ttagttctatgtgcagtttctccacattatgaagtgctttcaacggaaaatgacaataagtgtaaggcatttctgctttagtcaacttgcttaagcttaa |
49438474 |
T |
|
| Q |
1097 |
ggtttcaccctcttgatgggtaaaagagtccttaagcgagaactttaaatgttctgtatgcaaatcttcaagaattggacatccagccagaagcaa |
1192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49438475 |
ggtttcaccctcttgatgggtaaaagagtccttaagcgagaactttaaatgttctgtatgcaaatcttcaagaattggacatccagccagaagcaa |
49438570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 11 - 442
Target Start/End: Original strand, 49437264 - 49437693
Alignment:
| Q |
11 |
cgaagaatatagagtgtatttacttgtactcaaaaaacagagctgtggaccgatgagctaaccaaggctaaaaaactattttaaaacataaggatctttc |
110 |
Q |
| |
|
|||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
49437264 |
cgaacaatatagagtgtattttcttgaactcaaaaaacagagctgtggaccgatgagctaaccaagggtaaaaaactattttaaaacataaagatctttc |
49437363 |
T |
|
| Q |
111 |
aaatggaagatcttattgagatagaattcaaagttgcatatgtgtagtttataaatgatcctaagactatacatgatcatcccctttgttttacctctaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49437364 |
aaatggaagatcttattgagatagaattcaaagttgcatatgtgtagtttataaatgatcctaagactatacatgatcatcccctttgttttacctctaa |
49437463 |
T |
|
| Q |
211 |
caaatggataaagtcatacacaaggtcaacaaatttaattgaagtatgataaatggattcaacaaatttataaaccnnnnnnntggaaagttgtagactt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
49437464 |
caaatggataaagtcatacacaaggtcaacaaatttaattgaagtatgataaatggattcaacaaatttataaacc-aaaaaatggaaagttgtagactt |
49437562 |
T |
|
| Q |
311 |
aatttcggtaacaaacaagtttatnnnnnnntatgtctacaagtttacgggataatttttccttcacttgtgcaccaacacaaatttaatgacaatcaag |
410 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
49437563 |
aatttcggtaacaaacaagtttataaaaaaa-atgtctacaagtttacgggataatttttccttcacttgtgcaccaacacaaatttcatgacaatcaag |
49437661 |
T |
|
| Q |
411 |
gtttcacattacaaaccaacaaacctagcagc |
442 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
49437662 |
gtttcacattacaaaccaacaaacctagcagc |
49437693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 184; E-Value: 5e-99
Query Start/End: Original strand, 445 - 632
Target Start/End: Original strand, 49437821 - 49438008
Alignment:
| Q |
445 |
cacagattgacattgtttgcaaaactcttgcattcttcagaatatatattgttgacataagctcaccctgttggcctatgaaattctgaaatatgcaagt |
544 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49437821 |
cacagattgacattgtttgcaaaactcttgcattcttcagaatatatattgttgacataagctcaccctgttggcctatgaaattctgaaatatgcaagt |
49437920 |
T |
|
| Q |
545 |
tttgaggtgtagtgaaaggcattgcggaacaaattttgggtcctcccaatttttctggacatgtagtcttctatcaatagtcgagccc |
632 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49437921 |
tttgaggtgtagtgaaaggcattgcggaacaaattttgggtccttccaatttttctggacatgtagtcttctatcaatagtcgagccc |
49438008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 963 - 1066
Target Start/End: Complemental strand, 49415481 - 49415378
Alignment:
| Q |
963 |
tattcatatagcaataataaatttcaaaccttatttagttctatgtgcagtttctccacattatgaagtgctttcaacggaaaatgacaataagtgtaag |
1062 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||||| ||||| || ||||||||||||||||||||| |||||||||||| ||||| ||| |
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|
| T |
49415481 |
tattcatatagcaataataaatttcaaacctgatttatttctatgtacagttccttcacattatgaagtgctttcaatggaaaatgacaaaaagtggaag |
49415382 |
T |
|
| Q |
1063 |
gcat |
1066 |
Q |
| |
|
|||| |
|
|
| T |
49415381 |
gcat |
49415378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 740 - 912
Target Start/End: Original strand, 49426758 - 49426928
Alignment:
| Q |
740 |
ttttcaagcttagggcaatgattgagcacttgcaccaacaaattccaattagagttgatagagtgaagtttcaacttggtcagattatgaaaggtaggaa |
839 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||| ||||||||| ||| |||||||| ||||||| |||| | | |||| ||| ||||||||||||| |
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|
| T |
49426758 |
ttttgaaggttagggcaatgattgagcacttgtgccaacaaatgccagttagagtttatagagtaaagtgcaagggttgtcaaattgtgaaaggtaggaa |
49426857 |
T |
|
| Q |
840 |
tctcatcaaaacttcgatacatctaaaaacaagtaaacaacatagaaatatataccatcagaaataaggtcaa |
912 |
Q |
| |
|
|||||||| ||| |||||||| || |||||| |||||||||| |||| |||||||| | |||||||||||| |
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|
| T |
49426858 |
tctcatcacaacctcgatacacct--aaacaaataaacaacatggaaaggtataccatgaaaaataaggtcaa |
49426928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 708 - 811
Target Start/End: Complemental strand, 43359814 - 43359711
Alignment:
| Q |
708 |
cctaaacttaacaaacctcatctagctcaaggttttcaagcttagggcaatgattgagcacttgcaccaacaaattccaattagagttgatagagtgaag |
807 |
Q |
| |
|
|||||||||||||||||| | ||||||| |||| ||| ||||||||| ||||||||||||| || |||||| ||||||| |||||||||||||||| |
|
|
| T |
43359814 |
cctaaacttaacaaacctgactaagctcaacattttgaaggttagggcaaggattgagcacttgtactaacaaacgccaattatagttgatagagtgaag |
43359715 |
T |
|
| Q |
808 |
tttc |
811 |
Q |
| |
|
|||| |
|
|
| T |
43359714 |
tttc |
43359711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 707 - 832
Target Start/End: Complemental strand, 49415840 - 49415715
Alignment:
| Q |
707 |
ccctaaacttaacaaacctcatctagctcaaggttttcaagcttagggcaatgattgagcacttgcaccaacaaattccaattagagttgatagagtgaa |
806 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||| ||| | ||||| || ||||||||||| ||||||||| |||||||||||| ||||||| || |
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|
| T |
49415840 |
ccctaaacttaacaaacctcactaagctcaacattttgaaggctggggcagtggttgagcacttgtgccaacaaatgccaattagagtttatagagtaaa |
49415741 |
T |
|
| Q |
807 |
gtttcaacttggtcagattatgaaag |
832 |
Q |
| |
|
|| ||| ||||||| |||||||||| |
|
|
| T |
49415740 |
gtcccaagttggtcaaattatgaaag |
49415715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 459 - 597
Target Start/End: Original strand, 17641140 - 17641278
Alignment:
| Q |
459 |
gtttgcaaaactcttgcattcttcagaatatatattgttgacataagctcaccctgttggcctatgaaattctgaaatatgcaagttttgaggtgtagtg |
558 |
Q |
| |
|
|||||||||||| |||||||||||||||| | | ||| | | |||||| || | |||||||||||| || ||| | ||||| |||| ||||||| || |
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|
| T |
17641140 |
gtttgcaaaacttttgcattcttcagaatgtttcttgccaatagaagctcgccttcttggcctatgaagtttagaactttgcaaattttaaggtgtaatg |
17641239 |
T |
|
| Q |
559 |
aaaggcattgcggaacaaattttgggtcctcccaatttt |
597 |
Q |
| |
|
||| ||||||||||||||| |||||||| ||||||||| |
|
|
| T |
17641240 |
aaaaacattgcggaacaaatattgggtccacccaatttt |
17641278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 704 - 847
Target Start/End: Original strand, 17641591 - 17641735
Alignment:
| Q |
704 |
gatccctaaacttaacaaacctcatctagctcaaggttttcaagcttagggcaatgat-tgagcacttgcaccaacaaattccaattagagttgatagag |
802 |
Q |
| |
|
||||||||||||||| |||||| | ||||||| |||| ||| |||||||| || | |||||||||| ||| |||| |||||||||||| | |||| |
|
|
| T |
17641591 |
gatccctaaacttaagaaacctgactaagctcaacattttgaaggttagggcagtgctatgagcacttgtgacaagaaatgccaattagagtttagagag |
17641690 |
T |
|
| Q |
803 |
tgaagtttcaacttggtcagattatgaaaggtaggaatctcatca |
847 |
Q |
| |
|
| | || ||| ||||||| ||||||||| || |||||||||||| |
|
|
| T |
17641691 |
taatgtcccaagttggtcaaattatgaaaagtgggaatctcatca |
17641735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 461 - 495
Target Start/End: Complemental strand, 43362389 - 43362355
Alignment:
| Q |
461 |
ttgcaaaactcttgcattcttcagaatatatattg |
495 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |
|
|
| T |
43362389 |
ttgcaaaactcttgcattcttcacaatatatattg |
43362355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1151 - 1193
Target Start/End: Original strand, 49434686 - 49434728
Alignment:
| Q |
1151 |
tgtatgcaaatcttcaagaattggacatccagccagaagcaat |
1193 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
49434686 |
tgtatgtaaatcttctagaattggacatccagccaaaagcaat |
49434728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 449 - 491
Target Start/End: Original strand, 49445332 - 49445374
Alignment:
| Q |
449 |
gattgacattgtttgcaaaactcttgcattcttcagaatatat |
491 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
49445332 |
gattgtcatggtttgcaaaactcttgcattcttcaaaatatat |
49445374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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