View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5987_low_13 (Length: 379)
Name: NF5987_low_13
Description: NF5987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5987_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 44142271 - 44141899
Alignment:
| Q |
1 |
atcttttatgatttccagctggattccggacttttatgttttctgcagcttctgtccgaggagcaaaacatgggttttccttcacattcaataggtatac |
100 |
Q |
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| T |
44142271 |
atcttttatgatttccagctggattccggacttttatgttttctgcagcttcagtccgaggagcaaaacatgggttttccttcacattcaataggtatac |
44142172 |
T |
|
| Q |
101 |
tttcctcacttgagaaaaaacatttcttttctctatttgtatttgttcagtaattgagtggaaatgggcgaaagcatggtttgttttcatgagtttattt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44142171 |
tttcctcacttgagaaaaaacatttcttttctctatttgtatttgttcaataattgagtggaaatgggcgaaagcatggtttgttttcatgagtttattt |
44142072 |
T |
|
| Q |
201 |
gggctatatatctttagggccactactgattcggattcatatcttctcaacttatttctgcaaaatgtaatccaaaagttaaatgtggttatatagtgca |
300 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44142071 |
gggctatatatctttagggctactactgattcggattcatatcttctcaacttatttctgcaaaatgtaatccaaaagttaaatgtggttatatagtgca |
44141972 |
T |
|
| Q |
301 |
gatcgcattttctc----aacaaaacnnnnnnnncattaatggttgtataagatataacctcaggctcctttg |
369 |
Q |
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| T |
44141971 |
gatcacattttctcaaaaaaaaaaaaaaaaaaaacattaatggttgtataagatataacctcaggctcctttg |
44141899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 152 - 369
Target Start/End: Complemental strand, 50062698 - 50062476
Alignment:
| Q |
152 |
aattgagtggaaatgggcgaaagcatggtttgttttcatgagtttatttgggctatatatctttagggccactactgattcggattcatatcttctcaac |
251 |
Q |
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| T |
50062698 |
aattgagcggaaatgggcgaaagcatattttgttttcatgagtttatttgggctatatatctttagggctactactgattcggattcatatcttctcaac |
50062599 |
T |
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| Q |
252 |
ttatttctgcaaaatgtaatccaaaagttaaatgtggttatatagtgcagatcgcattttctc-----aacaaaacnnnnnnnncattaatggttgtata |
346 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||| | |||||||||||||| |
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| T |
50062598 |
ttatttctgcaaaatgtaatccaaaagttaaatgtggttatatagtgtagatcgcattttctcaaaaaaaaaaaaaaaaaaaaaccttaatggttgtata |
50062499 |
T |
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| Q |
347 |
agatataacctcaggctcctttg |
369 |
Q |
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||||||||||||||||||||||| |
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| T |
50062498 |
agatataacctcaggctcctttg |
50062476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 50062923 - 50062794
Alignment:
| Q |
1 |
atcttttatgatttccagctggattccggacttttatgttttctgcagcttctgtccgaggagcaaaacatgggttttccttcacattcaataggtatac |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50062923 |
atcttttatgatttccagctggattgcggacttttatgttttctgcagcttcagtccgaggagcaaaacatgggttttccttcacattcaataggtatac |
50062824 |
T |
|
| Q |
101 |
tttcctcacttgagaaaaaacatttctttt |
130 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
50062823 |
tttcctcacttgagaaaaaacatttctttt |
50062794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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