View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5987_low_16 (Length: 309)
Name: NF5987_low_16
Description: NF5987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5987_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 26 - 302
Target Start/End: Original strand, 125686 - 125963
Alignment:
| Q |
26 |
tctagactatgattttatttgaaacttttgtttatttccttcgtattaatttcaagatataatgctcaactcatgttgtgttacttacatgatccaaaat |
125 |
Q |
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| T |
125686 |
tctagactacgattttatttgaaacttttgtttatttccttcgtattaatttcaagatataatgcgcaactcatgttgtgttacttacatgatccaaaat |
125785 |
T |
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| Q |
126 |
tactaacaagagataaaatgctacagatgttactttcttcaccttcaatttcgaatattcatgtttatcatgcttctttcactgcactcatttcgacaag |
225 |
Q |
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| T |
125786 |
tactaacaagagataaaatgctacatatgttactttcttcaccttcaatttcgaatattcatgtttatcatgcttctttcactgcactcatttcgacaac |
125885 |
T |
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| Q |
226 |
cttttcttct-attcatttcaacatacatttcgtcaatcaatggtttctaataacaaatacaactcttaagtattatc |
302 |
Q |
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| T |
125886 |
cttttcttctaattcatttcaacgtacatttcgtcaatcaatggtttctaataacaaatacaactcttaagtattatc |
125963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 213 - 272
Target Start/End: Complemental strand, 4412707 - 4412648
Alignment:
| Q |
213 |
tcatttcgacaagcttttcttctattcatttcaacatacatttcgtcaatcaatggtttc |
272 |
Q |
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| T |
4412707 |
tcatttcgacaagcttttcttctattcatttcagcatacatttcctcaatcaatggtttc |
4412648 |
T |
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