View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5987_low_18 (Length: 299)
Name: NF5987_low_18
Description: NF5987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5987_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 14 - 281
Target Start/End: Original strand, 26417588 - 26417855
Alignment:
| Q |
14 |
catcactaaagagactcgggaccctgccaaattttaatcactgcactattaggaagaaaacccattctctacatcagacactcatcgtcaaaatatccgt |
113 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
26417588 |
catcactaaagggactcgggaccctgccaaattttaatcactggactattaggaagaaaacccattctctacatcagacactcatcttcaaaatatccgt |
26417687 |
T |
|
| Q |
114 |
aaaaaggaaacaccataaaccatcacagcagaccaacattagacctccatagtcactacctccaccatcatccgtaatccaaaaaccaaaccataaccag |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26417688 |
aaaaaggaaacaccataaaccatcacagcagaccaacattagacctccatagtcactacctccaccatcatccgtaatccaaaaaccaaaccacaaccag |
26417787 |
T |
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| Q |
214 |
aaactaactagtacccatcttcttgaagccagtaactctccttcggcattctcattcaacccataatc |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26417788 |
aaactaactagtacccatcttcttgaagccagtaactctccttcggcattctcattcaacccataatc |
26417855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 14 - 281
Target Start/End: Complemental strand, 27983375 - 27983123
Alignment:
| Q |
14 |
catcactaaagagactcgggaccctgccaaattttaatcactgcactattaggaagaaaacccattctctacatcagacactcatcgtcaaaatatccgt |
113 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||| ||| |||||||| ||||||||||||||||||||||||||||||||| ||| |||||||| || | |
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| T |
27983375 |
catcactaaagggactcgggaccctgccagattttgatcgctgcactactaggaagaaaacccattctctacatcagacacttatcatcaaaatagccct |
27983276 |
T |
|
| Q |
114 |
aaaaaggaaacaccataaaccatcacagcagaccaacattagacctccatagtcactacctccaccatcatccgtaatccaaaaaccaaaccataaccag |
213 |
Q |
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|||| ||||||||||||||||||||||||| |||||| ||||||| |||||||||| || | ||| | ||||||||||| |||||| |
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| T |
27983275 |
aaaatggaaacaccataaaccatcacagcaaaccaaccttagacc---------------tccaccatcacccttcatcgagaaaccaaaccacaaccag |
27983191 |
T |
|
| Q |
214 |
aaactaactagtacccatcttcttgaagccagtaactctccttcggcattctcattcaacccataatc |
281 |
Q |
| |
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|||||||||||||||| || |||||||| ||||||||||||||| |||||||||||| |||||||| |
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| T |
27983190 |
aaactaactagtacccttcctcttgaaggcagtaactctccttcaacattctcattcacaccataatc |
27983123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 14 - 281
Target Start/End: Complemental strand, 28069905 - 28069653
Alignment:
| Q |
14 |
catcactaaagagactcgggaccctgccaaattttaatcactgcactattaggaagaaaacccattctctacatcagacactcatcgtcaaaatatccgt |
113 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||| ||| |||||||| ||||||||||||||||||||||||||||||||| ||| |||||||| || | |
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| T |
28069905 |
catcactaaagggactcgggaccctgccagattttgatcgctgcactactaggaagaaaacccattctctacatcagacacttatcatcaaaatagccct |
28069806 |
T |
|
| Q |
114 |
aaaaaggaaacaccataaaccatcacagcagaccaacattagacctccatagtcactacctccaccatcatccgtaatccaaaaaccaaaccataaccag |
213 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||| ||||||| |||||||||| || | ||| | ||||||||||| |||||| |
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| T |
28069805 |
aaaatggaaacaccataaaccatcacagcaaaccaaccttagacc---------------tccaccatcacccttcatcgagaaaccaaaccacaaccag |
28069721 |
T |
|
| Q |
214 |
aaactaactagtacccatcttcttgaagccagtaactctccttcggcattctcattcaacccataatc |
281 |
Q |
| |
|
|||||||||||||||| || |||||||| ||||||||||||||| |||||||||||| |||||||| |
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|
| T |
28069720 |
aaactaactagtacccttcctcttgaaggcagtaactctccttcaacattctcattcacaccataatc |
28069653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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