View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5987_low_19 (Length: 298)
Name: NF5987_low_19
Description: NF5987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5987_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 39639550 - 39639820
Alignment:
| Q |
18 |
cacaatatttgcgattctgtgaactcctaaaaataaagtatatgttagccaagcaaccaccacgatgttaagtctaaccattgagctgcaaaaatgtaga |
117 |
Q |
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|||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39639550 |
cacaatatttgcgattctgtgaactcctaaaattaaattttatgttagccaagcaaccaccacgatgttaagtctaaccattgagctgcaaaaatgtaga |
39639649 |
T |
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| Q |
118 |
cacaccaagacagttgacactactcaacattgatctctcagtgactagagaactatcatgcaatgataagcaaagcaaccaccacataaggccacacagt |
217 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39639650 |
cacactaagacagttgacactactcaacattgatctctcagtgtctagagaactatcatgcaatgataagcaaagcaaccaccacataaggccacacagt |
39639749 |
T |
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| Q |
218 |
cagcactctgagcaccatggagaagattagattagtagtagaaattcttgagatgctcccacaaccctatg |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39639750 |
cagcactctgagcaccatggagaagattagattagtagtagaaattcttgagatgctcccacaaccctatg |
39639820 |
T |
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