View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5987_low_2 (Length: 905)
Name: NF5987_low_2
Description: NF5987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5987_low_2 |
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| [»] scaffold0076 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 788; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 788; E-Value: 0
Query Start/End: Original strand, 19 - 896
Target Start/End: Original strand, 45980387 - 45981268
Alignment:
| Q |
19 |
atagtgtttcatatactatttatattaagcagtcacatttacgtatagctactgcaaattaagtttcaaaggtaaaagtgcaagtaatattacatcaata |
118 |
Q |
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| T |
45980387 |
atagtgtttcatctactatttatattaagctgtcacatttacgtatagctactgcaaattaagtttcaaaggtaaaagtgcaagtaatattacatcaata |
45980486 |
T |
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| Q |
119 |
gccaaaaacatattcaatctctaacatataacatgcagtaattatttcatcaaaatcaaattatatatagcataataactatttcaattaccattcttaa |
218 |
Q |
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| T |
45980487 |
gccaaaaacatattcaatctctaacatataacatgcagtaattatttcatcaaaatcaaattatatatagcataataactatttcaattactattcttaa |
45980586 |
T |
|
| Q |
219 |
tcattacatcaagctaaatcattgtataataacttttgtacccttggttgtagtaagagacttgttgctacttgttctaaaattaattaattgacaatat |
318 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45980587 |
tcattacatcaagctaaaacattgtataataacttttgtacccttggttgtagtaagagacttgttgctacttgttctaaaattaattaattgacaatat |
45980686 |
T |
|
| Q |
319 |
tttgtagataaaattgaccat----actaataggttttacatgcttcacattaatatgtttatgcccattgtgaatgccttcgaagaaattcctgaatgt |
414 |
Q |
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|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
45980687 |
tttgtagataaaattggccatgtatactaataggttttacatgcttcacattaatatgtttatgtccattgtgaatgccttcgaagaaattcctgaatgt |
45980786 |
T |
|
| Q |
415 |
ttgatctcaagtgagcatggtcactgttcattggtctttgtgttgtataatcactttgtagattgtattgaggttcttaagttaattaatgttgagttgt |
514 |
Q |
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| T |
45980787 |
ttgatctcaagtgagcatggtcactactcattggtctttgtgttgtataatcactttgtagattgtattgaggttcttaagttaattaatgttgagttgt |
45980886 |
T |
|
| Q |
515 |
tagttctttgtcatttacacttgatcttatacatcgttggacttatattaaatatctagggtgttgttttacgcaaattttactttattttagtggtgct |
614 |
Q |
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| T |
45980887 |
tagttctttgtcatttacacttgatcttatacatcgttggacttatattaaatatctagggtgttgtttttcgcaaattttactttattttagtggtgct |
45980986 |
T |
|
| Q |
615 |
agaaccaagaggtttatgagtgatagtatggttaccagtattaaggccttggtttactttctttaaccaataaatcatcatgtactnnnnnnntaagtat |
714 |
Q |
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| T |
45980987 |
agaaccaagaggtttatgagtgatagtatggttaccagtattaaggccttggtttactttctttaaccaataaatcatcatgtactaaaaatataagtat |
45981086 |
T |
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| Q |
715 |
gcaaagctgcaaatgcaagataagttaatcatcatgtactgattgcaagaagatttattcaaagacttgacttagactattgataagtgtatgcacaaat |
814 |
Q |
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| T |
45981087 |
gcaaagctgcaaatgcaagataagttaatcatcatgtgctgattgcaagaagatttcttcaaagacttgacttagactattgataagtgtatgcacaact |
45981186 |
T |
|
| Q |
815 |
ggcaaggactgaaacatgcacattagcggtttccttagcaagtgcaaaagtttggtctatgtttcacctatatgatgatgtc |
896 |
Q |
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| T |
45981187 |
ggcaaggactgaaacatgcacattaacggtttccttagcaagtgcaaaagtttggtctatgtttcacctatatcatgatgtc |
45981268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 198 - 321
Target Start/End: Original strand, 45222254 - 45222378
Alignment:
| Q |
198 |
tatttcaattaccattcttaatc-attacatcaagctaaatcattgtataataacttttgtacccttggttgtagtaagagacttgttgctacttgttct |
296 |
Q |
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| T |
45222254 |
tatttcaattaccattcttaatgtattacatgaagctaaatcatactataacaacttttggaccactggttctagtaagagacctgctgctacttgttct |
45222353 |
T |
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| Q |
297 |
aaaattaattaattgacaatatttt |
321 |
Q |
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| T |
45222354 |
aaaatcaattaattggccatatttt |
45222378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 803 - 875
Target Start/End: Original strand, 45991840 - 45991912
Alignment:
| Q |
803 |
gtatgcacaaatggcaaggactgaaacatgcacattagcggtttccttagcaagtgcaaaagtttggtctatg |
875 |
Q |
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|||| ||| ||||||||||||||||||||||| ||| || ||||||||||||||||| || |||||||||| |
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| T |
45991840 |
gtatacaccaatggcaaggactgaaacatgcaggctagtgggttccttagcaagtgcaagaggttggtctatg |
45991912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 54; Significance: 2e-21; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 202 - 321
Target Start/End: Complemental strand, 9433 - 9310
Alignment:
| Q |
202 |
tcaattaccattcttaatcattacatcaagctaaatcat--tgta--taataacttttgtacccttggttgtagtaagagacttgttgctacttgttcta |
297 |
Q |
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|||||||||||||||||||||||||| |||||||||||| |||| ||| |||||||| |||| || || |||||| |||| || |||||||||||||| |
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| T |
9433 |
tcaattaccattcttaatcattacatgaagctaaatcatactgtaactaacaacttttgcacccctgattctagtaaaagacctgctgctacttgttcta |
9334 |
T |
|
| Q |
298 |
aaattaattaattgacaatatttt |
321 |
Q |
| |
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|||| ||||||||| | ||||||| |
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| T |
9333 |
aaatcaattaattggccatatttt |
9310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 199 - 321
Target Start/End: Complemental strand, 4355652 - 4355526
Alignment:
| Q |
199 |
atttcaattaccattcttaatcattacatcaagctaaatcattgtataataacttttgtacc----cttggttgtagtaagagacttgttgctacttgtt |
294 |
Q |
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||||||||||||||||||||||||||||| ||||||||| || |||| |||||||| ||| | ||||| ||||||||||| || ||||||||||| |
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| T |
4355652 |
atttcaattaccattcttaatcattacatgaagctaaattatactatagcaacttttgcacccctgcctggttctagtaagagacctgctgctacttgtt |
4355553 |
T |
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| Q |
295 |
ctaaaattaattaattgacaatatttt |
321 |
Q |
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| T |
4355552 |
ctaaaatcaattaattggccatatttt |
4355526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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