View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5987_low_22 (Length: 251)
Name: NF5987_low_22
Description: NF5987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5987_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 4669416 - 4669179
Alignment:
| Q |
1 |
aagttgttgacatgatttttagaaacctaattcaaagatttatgagtaattgtgacaagcacatgataaggcaacaaatctttaaaattgaaaatttagc |
100 |
Q |
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| T |
4669416 |
aagttgttgacatgatttttggaaacctaattcaaagatttatgagtaattgtgacaagcacat---aaggcaataaatctttaaaattgaaaatttagc |
4669320 |
T |
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| Q |
101 |
atggatgcatctatggaagaagnnnnnnncggtatccaaatcaaccaagtttcaggttttatccaagagttgatggccccttcaaaatagtgcagaaaat |
200 |
Q |
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| T |
4669319 |
atggatgcatctatggaagaagaaaaaaacggtatccaaatcaaccaagtttcaggttttatccaagagttgatgggcccttcaaaatagtgcagaaaat |
4669220 |
T |
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| Q |
201 |
cattaataatgcttacaaggcataaatgtcgaatacctatg |
241 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||| |
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| T |
4669219 |
cattaacaatgcttacaaggcataaatgtcgaatacctatg |
4669179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 2791049 - 2790992
Alignment:
| Q |
163 |
ccaagagttgatggccccttcaaaatagtgcagaaaatcattaataatgcttacaagg |
220 |
Q |
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||||||| |||||| |||||||||||||| || ||||||| | | ||||||||||||| |
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| T |
2791049 |
ccaagagctgatggtcccttcaaaatagttcaaaaaatcaatgacaatgcttacaagg |
2790992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 14472031 - 14471974
Alignment:
| Q |
163 |
ccaagagttgatggccccttcaaaatagtgcagaaaatcattaataatgcttacaagg |
220 |
Q |
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||||||| |||||| |||||||| ||||| |||||||||| | | ||||||||||||| |
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| T |
14472031 |
ccaagagctgatggtcccttcaagatagtacagaaaatcaatgacaatgcttacaagg |
14471974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 11716208 - 11716265
Alignment:
| Q |
163 |
ccaagagttgatggccccttcaaaatagtgcagaaaatcattaataatgcttacaagg |
220 |
Q |
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||||||| |||||| |||||||||||||| || ||||||| | | ||||||||||||| |
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| T |
11716208 |
ccaagagctgatggtcccttcaaaatagttcaaaaaatcaatgacaatgcttacaagg |
11716265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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