View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5987_low_24 (Length: 243)

Name: NF5987_low_24
Description: NF5987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5987_low_24
NF5987_low_24
[»] chr1 (2 HSPs)
chr1 (4-228)||(4669452-4669676)
chr1 (21-97)||(14474280-14474356)
[»] scaffold0015 (1 HSPs)
scaffold0015 (21-97)||(26932-27008)
[»] chr8 (1 HSPs)
chr8 (21-97)||(89081-89157)
[»] chr7 (2 HSPs)
chr7 (21-97)||(11709572-11709648)
chr7 (21-97)||(11713935-11714011)
[»] chr3 (2 HSPs)
chr3 (21-97)||(5380750-5380826)
chr3 (21-96)||(13720517-13720592)
[»] chr6 (1 HSPs)
chr6 (21-97)||(16775177-16775253)
[»] chr4 (1 HSPs)
chr4 (48-108)||(14024349-14024409)


Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 4 - 228
Target Start/End: Original strand, 4669452 - 4669676
Alignment:
Q  4 ttgacttgaagcttagtactttcctatattaatccgttcttcaacaattctttaactcgacgttggatttcaacatactcttgtggactcattccgtaag 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4669452 ttgacttgaagcttagtactttcctatattaatccgttcttcaacaattctttaactcgacgttggatttcaacatgctcttgtggactcattccgtaag 4669551  T
Q  104 ttggtttgttgggattagatccaaggataaatttaatagcatgtaagttggtttattgggaatagatccaaagataaatttaataacatgttggatatcg 203  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4669552 ttggtttgttgggattagatccaaggataaatttaataacatgtaagttggtttattgggaatagatccaaagataaatttaataacatgttggatatcg 4669651  T
Q  204 cattggtggcaatccctgcaaaatg 228  Q
    |||||||||||||||||||||||||    
T  4669652 cattggtggcaatccctgcaaaatg 4669676  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 14474280 - 14474356
Alignment:
Q  21 actttcctatattaatccgttcttcaacaattctttaactcgacgttggatttcaacatactcttgtggactcattc 97  Q
    |||||||| ||||| ||| || || | |||||||| |||| |||||  ||||||| ||| |||||||||||||||||    
T  14474280 actttcctgtattagtcctttttttagcaattcttcaacttgacgtgtgatttcagcatgctcttgtggactcattc 14474356  T

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Target: scaffold0015 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 26932 - 27008
Alignment:
Q  21 actttcctatattaatccgttcttcaacaattctttaactcgacgttggatttcaacatactcttgtggactcattc 97  Q
    |||||||| ||||| ||| ||||||| |||||||| |||| |||||  ||||||| ||| |||||||||||||||||    
T  26932 actttcctgtattagtcctttcttcagcaattcttcaacttgacgtgtgatttcagcatgctcttgtggactcattc 27008  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 89157 - 89081
Alignment:
Q  21 actttcctatattaatccgttcttcaacaattctttaactcgacgttggatttcaacatactcttgtggactcattc 97  Q
    |||||||| ||||| ||| ||||||| |||||||| |||| |||||  ||||||| ||| |||||||||||||||||    
T  89157 actttcctgtattagtcctttcttcagcaattcttcaacttgacgtgtgatttcagcatgctcttgtggactcattc 89081  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 11709648 - 11709572
Alignment:
Q  21 actttcctatattaatccgttcttcaacaattctttaactcgacgttggatttcaacatactcttgtggactcattc 97  Q
    |||||||| ||||| ||| ||||||| |||||||| |||| |||||  ||||||| ||| |||||||||||||||||    
T  11709648 actttcctgtattagtcctttcttcagcaattcttcaacttgacgtgtgatttcagcatgctcttgtggactcattc 11709572  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 11714011 - 11713935
Alignment:
Q  21 actttcctatattaatccgttcttcaacaattctttaactcgacgttggatttcaacatactcttgtggactcattc 97  Q
    |||||||| ||||| ||| ||||||| |||||||| |||| |||||  ||||||| ||| |||||||||||||||||    
T  11714011 actttcctgtattagtcctttcttcagcaattcttcaacttgacgtgtgatttcagcatgctcttgtggactcattc 11713935  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 5380750 - 5380826
Alignment:
Q  21 actttcctatattaatccgttcttcaacaattctttaactcgacgttggatttcaacatactcttgtggactcattc 97  Q
    |||||||| ||||| ||| ||||||| |||||||| |||| |||||  ||||||| ||| |||||||||||||||||    
T  5380750 actttcctgtattagtcctttcttcagcaattcttcaacttgacgtgtgatttcagcatgctcttgtggactcattc 5380826  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 13720517 - 13720592
Alignment:
Q  21 actttcctatattaatccgttcttcaacaattctttaactcgacgttggatttcaacatactcttgtggactcatt 96  Q
    |||||||| ||||| ||| ||||||| |||||||| |||| |||||  ||||||| ||| ||||||||||||||||    
T  13720517 actttcctgtattagtcctttcttcagcaattcttcaacttgacgtgtgatttcagcatgctcttgtggactcatt 13720592  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 16775177 - 16775253
Alignment:
Q  21 actttcctatattaatccgttcttcaacaattctttaactcgacgttggatttcaacatactcttgtggactcattc 97  Q
    |||||||| ||||| ||| || |||| |||||||| |||| |||||  ||||||| ||| |||||||||||||||||    
T  16775177 actttcctgtattagtccttttttcagcaattcttcaacttgacgtgtgatttcagcatgctcttgtggactcattc 16775253  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 14024409 - 14024349
Alignment:
Q  48 caattctttaactcgacgttggatttcaacatactcttgtggactcattccgtaagttggt 108  Q
    |||||||| |||| |||||  ||||||| ||| |||||||||||||||||  |||||||||    
T  14024409 caattcttcaacttgacgtgtgatttcagcatgctcttgtggactcattctataagttggt 14024349  T

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