View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5987_low_25 (Length: 243)
Name: NF5987_low_25
Description: NF5987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5987_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 88 - 224
Target Start/End: Original strand, 9474217 - 9474353
Alignment:
| Q |
88 |
cagatgaaacttcatcattttcgacaatccattcatcatcaaattcaagatcatcaaggttatgttcaaccgtctttctagtttgcttcttggccaattt |
187 |
Q |
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| T |
9474217 |
cagatgaaacttcatcattttcgacaatccattcatcatcaaattcaagatcgtcaaggttatgttcaaccgtctttctagtttgcttcttggccaattt |
9474316 |
T |
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| Q |
188 |
tgaatttgtcatcacagagataacatcattcattgtc |
224 |
Q |
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| T |
9474317 |
tgaatttgtcatcacagagataacatcattcattgtc |
9474353 |
T |
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Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 9474092 - 9474170
Alignment:
| Q |
1 |
taacatcctaccaaatagataacaagctcaacattaatttcatttgtttaatcataagtcacaagctctcatagtctca |
79 |
Q |
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|||||||||| |||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9474092 |
taacatcctatcaaatagacaacaatctcaacaaaaatttcatttgtttaatcataagtcacaagctctcatagtctca |
9474170 |
T |
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