View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5987_low_9 (Length: 440)
Name: NF5987_low_9
Description: NF5987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5987_low_9 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Original strand, 7368807 - 7369247
Alignment:
| Q |
1 |
tttctcagatttatcccattgacaaatgtttatcaattgagggaattgaagcctataaattgagcataaaaaatcaaagagaggaacgaggaggagcttg |
100 |
Q |
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| T |
7368807 |
tttctcagatttttcccattgacaaatgtttatcaattgagggaattgaagcctataaattgagcacaaaaaatcaaagagaggaacgaggaggagcttg |
7368906 |
T |
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| Q |
101 |
ctcttgctttgtggatgttggtggtgcggtacaatgggtgctgcaactgagctcataattgacactgaaatatgtaaacacttcaccatgcacttttacc |
200 |
Q |
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| T |
7368907 |
ctcttgctttgtagatgttggtggggtggtacaatgggtgctgcaactgagctcataattgacactgaaat--gtaaacacttcaccatgcacttttacc |
7369004 |
T |
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| Q |
201 |
ttttaggatgatatatacattagttaaattcatgtataa---caagctgcttagcgtttgaattataacannnnnnnaacgtagtacatatgagaaatta |
297 |
Q |
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| T |
7369005 |
ttttaggatgatatatacattagttaaattcatgtataataacaagctgcttagcgtttgaattataacatttttttaacgtagtacatatgagaaatta |
7369104 |
T |
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| Q |
298 |
gaactttgtatatattaatgctcatcctaacctaagtctttatttcacaaaagaaattatccattgaccactgtcttcgtccctaatgcaagcaccaatt |
397 |
Q |
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| T |
7369105 |
gaactttgtatatattaatgctcatcctaacctaagtctttatttcacaaaagaaattatccattgaccactgtcttcgtccctaatgcaagcaccaatt |
7369204 |
T |
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| Q |
398 |
gctgtaaatccaggatcagcgaaaaatatagtgtcaatgtagc |
440 |
Q |
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| T |
7369205 |
gctgtaaatccaagatcagcgaaaaatatagcgtcaatgtagc |
7369247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 91 - 241
Target Start/End: Original strand, 7290050 - 7290200
Alignment:
| Q |
91 |
gaggagcttgctcttgctttgt-ggatgttggtggtgc-ggtacaatgggtgctgcaactgagctcataattgacactgaaatatgtaaacacttcacca |
188 |
Q |
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| T |
7290050 |
gaggagcttgctcttgctttgttgggtgttggtggggttggtacaatgggtgctgcagctgagctcataattgacactgaa--atgtaaacacttcaaca |
7290147 |
T |
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| Q |
189 |
tgcacttttaccttttaggatgatatatacattagttaaa-ttcatgtataaca |
241 |
Q |
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| T |
7290148 |
tgcagttttacatttt-ggatgatatgtacattagttaaatttcatgtataaca |
7290200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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