View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5988_high_1 (Length: 670)

Name: NF5988_high_1
Description: NF5988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5988_high_1
NF5988_high_1
[»] chr8 (1 HSPs)
chr8 (1-663)||(38724818-38725493)


Alignment Details
Target: chr8 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 663
Target Start/End: Complemental strand, 38725493 - 38724818
Alignment:
Q  1 tttactcattccaaacacaaattttcctttacaaatgcaattttgactttgcaaatgatgtatggatgaaaatcaaacgtaaacctaccaaccaacctac 100  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||    |||||||||||    
T  38725493 tttactcattccaaacacaaattttcctttacaaacacaattttgactttgcaaataatgtatggatgaaaatcaaacgtaaacc----aaccaacctac 38725398  T
Q  101 gtttcataccaaaacacgagttctacagaagctacatacatatctaagctaaatcatgtttgataaaaatagcgaacannnnnnnnnn-caaatgnnnnn 199  Q
    |||||| ||||||||| ||||| |||||||||||||||    |||||||||||||||||||||||||||||| |||||           ||||||         
T  38725397 gtttcacaccaaaacaagagttgtacagaagctacata----tctaagctaaatcatgtttgataaaaatagtgaacatttttttttttcaaatgaaaaa 38725302  T
Q  200 nncactgaattaataagaatagttaaactataaaccataagttataaatttaaaccctacttaaattagctttcaaaatctgtaaaatacacaagtttgt 299  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38725301 aacactgaattaataagaatagttaaactataaaccataagttataaatttaaaccctacttaaattagctttcaaaatctgtaaaatacacaagtttgt 38725202  T
Q  300 gagaaaaattggtaaatgaatgtgtctattttagttatgttattttcttatttttggttcaacaaaaacattattgttaatttataaattattaaccatc 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38725201 gagaaaaattggtaaatgaatgtgtctattttagttatgttattttcttttttttggttcaacaaaaacattattgttaatttataaattattaaccatc 38725102  T
Q  400 cattgagccctttcnnnnnnnnnnnctatccattgagcgtaatttactaatttc--------------ggaaattttacggtattaaagtagaaccataa 485  Q
    ||||||||||||||           |||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||    
T  38725101 cattgagccctttcaaaaaaaaaaactatccattgagcgtaatttactaatttcggaaattgactttgggaaattttacggtattaaagtagaaccataa 38725002  T
Q  486 aacataagccgggttagttgaatgtactgttgccagttcgtactaaacttttttctgtctctct------ctctaactctaactctaacaaacaagtacc 579  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||      ||||||||||||||||||||||||||||||    
T  38725001 aacataagccgggttagttgaatgtactgttgccagttcgtactaaatttttttctgtttctctctctaactctaactctaactctaacaaacaagtacc 38724902  T
Q  580 cttttcgttgaattttccaatctaacaagtgccagtgaaatgtgatcttgcttccacacccaaacctaaaccttgtctgtgctg 663  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38724901 cttttcgttgaattttccaatctaacaagtgccagtgaaatgtgatcttgcttccacacccaaacctaaaccttgtctgtgctg 38724818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University