View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5988_high_14 (Length: 253)
Name: NF5988_high_14
Description: NF5988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5988_high_14 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 20 - 253
Target Start/End: Original strand, 47126248 - 47126488
Alignment:
| Q |
20 |
acacgacacttacatgatgacaccaataataatttaaga---tgaaataattgaatgtacccacatatgtttggatcgtgtcggacaccaaac----ctt |
112 |
Q |
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| T |
47126248 |
acacgacacttacatgatgacaccaataataatttaagaaaatgaaataattgaatgtacccacatatgtttggatcgtgtcgaacaccaaacacacctt |
47126347 |
T |
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| Q |
113 |
caatctaaagtgtcggtgatacatagtttattcgataccaaagctaagtctttggttagataaatagcaagaattcaaagagaatggtttcagatggata |
212 |
Q |
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| T |
47126348 |
caatctaaagtgtcggtgatacatagtttattcgacaccaaagctaagtctttggttagataaatagcaaaaattcaaagagaatggtttcagatggata |
47126447 |
T |
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| Q |
213 |
tgctgttgggaattcccttaccagtgagtccaccctcccta |
253 |
Q |
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| T |
47126448 |
tgctgttgggaattcccttaccagtgagtccaccctcccta |
47126488 |
T |
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