View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5988_high_18 (Length: 231)
Name: NF5988_high_18
Description: NF5988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5988_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 73 - 208
Target Start/End: Original strand, 15018388 - 15018523
Alignment:
| Q |
73 |
tgatagaattaatttcgttaagaataagaaaggacaaaagttgataatcgtatccaaacttcaaaataattcacgattcaagtcatcaatcaaaatgaca |
172 |
Q |
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| T |
15018388 |
tgatagaattaatttcgttaagaataagaaaggacaaaagttgataatcgtatccaaacttcaaaataattcacgattcaagtcatcaatcaaaatgaca |
15018487 |
T |
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| Q |
173 |
aaagtgactggctacacaaagctcaagtgttcaacc |
208 |
Q |
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| T |
15018488 |
acagtgactggctacacaaagctcaagtgttcaacc |
15018523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 73 - 208
Target Start/End: Original strand, 15025506 - 15025641
Alignment:
| Q |
73 |
tgatagaattaatttcgttaagaataagaaaggacaaaagttgataatcgtatccaaacttcaaaataattcacgattcaagtcatcaatcaaaatgaca |
172 |
Q |
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| T |
15025506 |
tgatagaattaatttcgttaagaataagaaaggacaaaagttgataatcgtatccaaacttcaaaataattcacgattcaagtcatcaatcaaaatgaca |
15025605 |
T |
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| Q |
173 |
aaagtgactggctacacaaagctcaagtgttcaacc |
208 |
Q |
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| T |
15025606 |
acagtgactggctacacaaagctcaagtgttcaacc |
15025641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 110 - 208
Target Start/End: Original strand, 15043669 - 15043768
Alignment:
| Q |
110 |
aagttgata-atcgtatccaaacttcaaaataattcacgattcaagtcatcaatcaaaatgacaaaagtgactggctacacaaagctcaagtgttcaacc |
208 |
Q |
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| T |
15043669 |
aagttgatatatcgtatccaaacttcaaaataattcacgattcaagtcatcaatcaaaatgacaaaagtgactggctacacaaagctcaagtgttcaacc |
15043768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 117 - 208
Target Start/End: Original strand, 15003929 - 15004020
Alignment:
| Q |
117 |
taatcgtatccaaacttcaaaataattcacgattcaagtcatcaatcaaaatgacaaaagtgactggctacacaaagctcaagtgttcaacc |
208 |
Q |
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| T |
15003929 |
taatcgtatccaaacttcaaaataattcacgattcaagtcatcaatcaaaatgacaacagtgaccggctacactgcgctcaagtgttcaacc |
15004020 |
T |
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