View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5988_high_4 (Length: 466)
Name: NF5988_high_4
Description: NF5988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5988_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 10 - 448
Target Start/End: Original strand, 33810142 - 33810579
Alignment:
| Q |
10 |
aaatgaactaagcaatccatacaaggtgcctctggcaagtcatattgtgcccttagtttggatcgataataacatgaatataaacatgcaagtcctgtca |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
33810142 |
aaatgaactaagcaatccatacaaggtgcctctggcaagtcatattgtgccctcagtttggaccgataataacatgaatataaacatgcaagtccagtca |
33810241 |
T |
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| Q |
110 |
tagccagtaacgccccataaattgttccatcacatgtgcaagctgcataaaccaaattaagttaagggaccacaagattaatttttcctaaattttatat |
209 |
Q |
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| T |
33810242 |
cagccagtagcgccccataaattgttccatcacatgtgcaagctgcatataccaaattaagttaagggaccacaagattaatttttcctaaattttatat |
33810341 |
T |
|
| Q |
210 |
aaaatgcttacttacttgaattgcctttgtctactatctctgctatcattccaaaagtaacacaagggcagaagcaagtgaccaaaccttgtcaattaga |
309 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33810342 |
aaaa-gcttacttacttgaattgcctttgtctactatctctgctatcattccaaaagtaacacaagggcagaagcaagtgaccaaaccttgtcaattaga |
33810440 |
T |
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| Q |
310 |
aggnnnnnnnngtaattaaccataatatatatgtgttttaaagaaagtgaatgaatctactacacgatccttacagattccaggatcatcaagacaacgg |
409 |
Q |
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| T |
33810441 |
aggaaaaaaaagtaattaaccataatatatatgtgttttaaagaaagtgaatgaatctactacacgatccttacagattccaggatcatcaagacaacgg |
33810540 |
T |
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| Q |
410 |
caaagacgagttgaccattagtgtgtccttggggtgatc |
448 |
Q |
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| T |
33810541 |
caaagacgagttgaccattggtgtgtccttggggtgatc |
33810579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 163 - 426
Target Start/End: Original strand, 33815525 - 33815786
Alignment:
| Q |
163 |
aaattaagttaagggaccacaagattaatttttcctaaattttatataaaatgcttacttacttgaattgcctttgtctactatctctgctatcattcca |
262 |
Q |
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||||||||||||| || ||||| |||||||| ||||||||||||| |||| ||||||||||||||||||||||| || |||||||||||||||| |||| |
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| T |
33815525 |
aaattaagttaagagaacacaa--ttaattttgcctaaattttatagaaaa-gcttacttacttgaattgcctttatccactatctctgctatcaatcca |
33815621 |
T |
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| Q |
263 |
aaagtaacacaagggcagaagcaagtgaccaaaccttgtcaattag-aaggnnnnnnnngtaattaaccataatatatatgtgttttaaagaaa-gtgaa |
360 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| || | ||||||||||||||||||| |||| |||||||||| ||||| |
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| T |
33815622 |
aaagtaacacaagggcagaagcaagtgaccaaacctattcaattagaaaaggaaaaaaagtaattaaccataatatatttgtg-tttaaagaaaggtgaa |
33815720 |
T |
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| Q |
361 |
tgaatctactacacgatccttacagattccaggatcatcaagacaacggcaaagacgagttgacca |
426 |
Q |
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| T |
33815721 |
tgaatctactacatgattcttacagattcctggatcatcaagacaacggcaaagaccagttgacca |
33815786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 10 - 165
Target Start/End: Original strand, 33815051 - 33815206
Alignment:
| Q |
10 |
aaatgaactaagcaatccatacaaggtgcctctggcaagtcatattgtgcccttagtttggatcgataataacatgaatataaacatgcaagtcctgtca |
109 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
33815051 |
aaatgaactaagcaatccatacaaggtgcctctggcaagtcatattgtgccctcagtttggaccgataataacatgaatataaacatgcaagtccagtca |
33815150 |
T |
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| Q |
110 |
tagccagtaacgccccataaattgttccatcacatgtgcaagctgcataaaccaaa |
165 |
Q |
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|||||||| |||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
33815151 |
cagccagtagcgccccataaattgttccatcacaggtgcaagctgcatataccaaa |
33815206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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