View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5988_high_5 (Length: 451)
Name: NF5988_high_5
Description: NF5988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5988_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-113; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 235 - 446
Target Start/End: Original strand, 44567494 - 44567705
Alignment:
| Q |
235 |
atatcacaaatataccatgtctaactttacttttactatataacagggaaggtcggagggttcattgcttcaattcctgaagccatggttgctggtctcc |
334 |
Q |
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| T |
44567494 |
atatcacaaatataccatgtctaattttacttttactatataacagggaaggtcggagggttcattgcttcaattcctgaagccatggttgctggtctcc |
44567593 |
T |
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| Q |
335 |
tctgcattatgtgggcgatgcttacagcattaggcttgtccaatctacgctatactgagaccggaagctctcgaaatatcattatagttggactgtcatt |
434 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44567594 |
tctgcattatgtgggcgatgcttacagcattaggcttgtccaatctacgctatactgagaccggaagctctcgaaatatcattatagttggactgtcatt |
44567693 |
T |
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| Q |
435 |
gttcttctctct |
446 |
Q |
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|||||||||||| |
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| T |
44567694 |
gttcttctctct |
44567705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 20 - 170
Target Start/End: Original strand, 44567277 - 44567429
Alignment:
| Q |
20 |
catattgtgacgaacagccgttcaacagaattagaaacattagctaccttgatacacccttgagcttatttg--tttgtgttctttatttagtttatttg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
44567277 |
catattgtgacgaacagccgttcaacagaattagaaacattagctaccttgatacacccttgagcttatttgtttttttgttctttatttagtttatttg |
44567376 |
T |
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| Q |
118 |
ttaatcttgaaggacgccttttccttcctcctagtagtacttcattgcttcat |
170 |
Q |
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| T |
44567377 |
ttaatcttgaaggacgccttttccttcctcctagtagtacttcattgcttcat |
44567429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 249 - 446
Target Start/End: Complemental strand, 36029299 - 36029101
Alignment:
| Q |
249 |
ccatgtctaactttacttttactatat-aacagggaaggtcggagggttcattgcttcaattcctgaagccatggttgctggtctcctctgcattatgtg |
347 |
Q |
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|||||| ||| ||| |||||||||||| |||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||| |
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| T |
36029299 |
ccatgtttaattttgcttttactatattaacagggaaggttggagggttcattgcttcaattcctggagtcatggttgctggtctcctctgctttatgtg |
36029200 |
T |
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| Q |
348 |
ggcgatgcttacagcattaggcttgtccaatctacgctatactgagaccggaagctctcgaaatatcattatagttggactgtcattgttcttctctct |
446 |
Q |
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||| |||||||||||||| |||||||||||||||||||||| |||| | ||||||||||| |||||||| ||| ||||| | ||||||||||||||||| |
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| T |
36029199 |
ggcaatgcttacagcattgggcttgtccaatctacgctatagtgaggctggaagctctcgcaatatcataataattggattatcattgttcttctctct |
36029101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 289 - 446
Target Start/End: Original strand, 20126433 - 20126590
Alignment:
| Q |
289 |
ggagggttcattgcttcaattcctgaagccatggttgctggtctcctctgcattatgtgggcgatgcttacagcattaggcttgtccaatctacgctata |
388 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||| ||||| ||||| | |||||||| ||||||||||| | |
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| T |
20126433 |
ggagggttcattgcttcaattcctgaagttatggttgctggtctcctctgcttcatgtgggcaatgctcacagcttggggcttgtcaaatctacgctaca |
20126532 |
T |
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| Q |
389 |
ctgagaccggaagctctcgaaatatcattatagttggactgtcattgttcttctctct |
446 |
Q |
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|||| ||||||||||||| |||||||| |||||||| | |||||||| |||||||| |
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| T |
20126533 |
gtgaggccggaagctctcgcaatatcatcatagttgggttatcattgtttttctctct |
20126590 |
T |
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