View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5988_high_6 (Length: 424)

Name: NF5988_high_6
Description: NF5988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5988_high_6
NF5988_high_6
[»] chr5 (3 HSPs)
chr5 (1-266)||(43054463-43054728)
chr5 (393-424)||(13362245-13362276)
chr5 (396-424)||(35512146-35512174)
[»] chr1 (2 HSPs)
chr1 (393-424)||(42533019-42533050)
chr1 (396-424)||(37578190-37578218)
[»] chr6 (2 HSPs)
chr6 (394-424)||(3059253-3059283)
chr6 (392-424)||(30803855-30803887)
[»] chr3 (1 HSPs)
chr3 (391-424)||(40033858-40033891)
[»] chr8 (1 HSPs)
chr8 (396-424)||(34176443-34176471)
[»] chr4 (2 HSPs)
chr4 (396-424)||(35027996-35028024)
chr4 (392-424)||(51692921-51692953)


Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 43054728 - 43054463
Alignment:
Q  1 aagaaagaaacctgtatctccgaatgaaaaaaccatactcctttgaaaaagaataagaaaactaaccattggtaattttgtggagttgttcaggtcgcag 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43054728 aagaaagaaacttgtatctccgaatgaaaaaaccatactcctttgaaaaagaataagaaaactaaccattggtaattttgtggagttgttcaggtcgcag 43054629  T
Q  101 aagaattaggtaataaggatgtctcaatatattgttaagaattactacgttaaggatgtttcaatatattctgacagagattacttaaataaatggtttt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  43054628 aagaattaggtaataaggatgtctcaatatattgttaagaattactacgttaaggatgtttcaatatattctgagagagattacttaaataaatggtttt 43054529  T
Q  201 gatttgattcatgaaaagaataggaaacaaaagattggttttctccttaaaataaaaataggaaac 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43054528 gatttgattcatgaaaagaataggaaacaaaagattggttttctccttaaaataaaaataggaaac 43054463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 424
Target Start/End: Original strand, 13362245 - 13362276
Alignment:
Q  393 atataggtttaaatatgtatttcatccttgca 424  Q
    ||||||||||||||||||||||||||||||||    
T  13362245 atataggtttaaatatgtatttcatccttgca 13362276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 424
Target Start/End: Original strand, 35512146 - 35512174
Alignment:
Q  396 taggtttaaatatgtatttcatccttgca 424  Q
    |||||||||||||||||||||||||||||    
T  35512146 taggtttaaatatgtatttcatccttgca 35512174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 424
Target Start/End: Original strand, 42533019 - 42533050
Alignment:
Q  393 atataggtttaaatatgtatttcatccttgca 424  Q
    ||||||||||||||||||||||||||||||||    
T  42533019 atataggtttaaatatgtatttcatccttgca 42533050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 424
Target Start/End: Original strand, 37578190 - 37578218
Alignment:
Q  396 taggtttaaatatgtatttcatccttgca 424  Q
    |||||||||||||||||||||||||||||    
T  37578190 taggtttaaatatgtatttcatccttgca 37578218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 394 - 424
Target Start/End: Original strand, 3059253 - 3059283
Alignment:
Q  394 tataggtttaaatatgtatttcatccttgca 424  Q
    |||||||||||||||||||||||||||||||    
T  3059253 tataggtttaaatatgtatttcatccttgca 3059283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 424
Target Start/End: Original strand, 30803855 - 30803887
Alignment:
Q  392 aatataggtttaaatatgtatttcatccttgca 424  Q
    |||||||| ||||||||||||||||||||||||    
T  30803855 aatatagggttaaatatgtatttcatccttgca 30803887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 391 - 424
Target Start/End: Complemental strand, 40033891 - 40033858
Alignment:
Q  391 aaatataggtttaaatatgtatttcatccttgca 424  Q
    ||||||||| ||||||||||||||||||||||||    
T  40033891 aaatataggcttaaatatgtatttcatccttgca 40033858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 424
Target Start/End: Original strand, 34176443 - 34176471
Alignment:
Q  396 taggtttaaatatgtatttcatccttgca 424  Q
    |||||||||||||||||||||||||||||    
T  34176443 taggtttaaatatgtatttcatccttgca 34176471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 424
Target Start/End: Original strand, 35027996 - 35028024
Alignment:
Q  396 taggtttaaatatgtatttcatccttgca 424  Q
    |||||||||||||||||||||||||||||    
T  35027996 taggtttaaatatgtatttcatccttgca 35028024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 424
Target Start/End: Complemental strand, 51692953 - 51692921
Alignment:
Q  392 aatataggtttaaatatgtatttcatccttgca 424  Q
    |||||||| ||||||||||||||||||||||||    
T  51692953 aatataggcttaaatatgtatttcatccttgca 51692921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University