View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5988_low_10 (Length: 381)
Name: NF5988_low_10
Description: NF5988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5988_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 102 - 364
Target Start/End: Original strand, 2434238 - 2434491
Alignment:
| Q |
102 |
ctaaatccttacttgaaattaaattaaacgaacaattttggcaatttgtttcatacaaatacgttagataaatgtacaaaccaatgtgtggccagttgta |
201 |
Q |
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| T |
2434238 |
ctaaatcgttacttgaaattaaattaaacgaacaattttggcaatttgtttcatacaaatacgttagataaatgtacaaaccaatgtgtggccagttcta |
2434337 |
T |
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| Q |
202 |
ttagacgtacatgtacaacacaaacaccacaaagatttttgtgacacaattcgtgagatggcggaagtgaggaacaagcaagtgattctgaaggactatg |
301 |
Q |
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| T |
2434338 |
t---------atgtacaacacaaacaccacaaagattttagtgacacaattcctgagatggcggaagtgaggaacaagcaagtgattctgaaggactatg |
2434428 |
T |
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| Q |
302 |
tgtctggttttcctaaagaatcagacctcaacattgttgacagtaccataacactcaagcttc |
364 |
Q |
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| T |
2434429 |
tgtctggttttcctaaagaatcagacctcaacattgttgacagtaccataacactcaagcttc |
2434491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 164 - 364
Target Start/End: Original strand, 2430712 - 2430911
Alignment:
| Q |
164 |
gttagataaatgtacaaaccaatgtgtggccagttgtattagacgt--acatgtacaacacaaacaccacaaagatttttgtgacacaattcgtgagatg |
261 |
Q |
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| T |
2430712 |
gttagatgaatgtacagacca---tgtggccagttgtattagatgtgtacatgtacaacacaaacaccacaaagatttttgcaacacaattcctgagatg |
2430808 |
T |
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| Q |
262 |
gcggaagtgaggaacaagcaagtgattctgaaggactatgtgtctggttttcctaaagaatcagacctcaacattgttgacagtaccataacactcaagc |
361 |
Q |
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| T |
2430809 |
gcggaaatgaggaacaagcaagtgattctgaaggactatgtgtctggttttcctaaagaatcagacatgaatattgtagacagtactataactctcaagc |
2430908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 266 - 346
Target Start/End: Complemental strand, 2499040 - 2498960
Alignment:
| Q |
266 |
aagtgaggaacaagcaagtgattctgaaggactatgtgtctggttttcctaaagaatcagacctcaacattgttgacagta |
346 |
Q |
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| T |
2499040 |
aagtgaggaacaagcaagtgattctgaaggactatgtatctggttttcctaaagaatcagacatgaacattattgaaagta |
2498960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 273 - 352
Target Start/End: Complemental strand, 2507568 - 2507489
Alignment:
| Q |
273 |
gaacaagcaagtgattctgaaggactatgtgtctggttttcctaaagaatcagacctcaacattgttgacagtaccataa |
352 |
Q |
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| T |
2507568 |
gaacaagcaagtgcttctgaaacactatgtgtctggttttcctaaagaatcagacctcaacattgttgatagtactataa |
2507489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 273 - 364
Target Start/End: Complemental strand, 2519370 - 2519279
Alignment:
| Q |
273 |
gaacaagcaagtgattctgaaggactatgtgtctggttttcctaaagaatcagacctcaacattgttgacagtaccataacactcaagcttc |
364 |
Q |
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| T |
2519370 |
gaacaagcaagtaattctgaaacactatgtgtctggttttcctaaagaatcagacatgaacatcattgacagtaccataactctcaagcttc |
2519279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 273 - 352
Target Start/End: Complemental strand, 2514658 - 2514579
Alignment:
| Q |
273 |
gaacaagcaagtgattctgaaggactatgtgtctggttttcctaaagaatcagacctcaacattgttgacagtaccataa |
352 |
Q |
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| T |
2514658 |
gaaccagcaagtgcttctgaaacattatgtgtctggttttcctaaagaatcagacctcaacattgttgatagtactataa |
2514579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 259 - 327
Target Start/End: Original strand, 1457845 - 1457913
Alignment:
| Q |
259 |
atggcggaagtgaggaacaagcaagtgattctgaaggactatgtgtctggttttcctaaagaatcagac |
327 |
Q |
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| T |
1457845 |
atggcgcaagtgagaaacaagcaagtgattttgagagactatgtgtctggttttcctaaggaatcagac |
1457913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 259 - 327
Target Start/End: Original strand, 2427552 - 2427620
Alignment:
| Q |
259 |
atggcggaagtgaggaacaagcaagtgattctgaaggactatgtgtctggttttcctaaagaatcagac |
327 |
Q |
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| T |
2427552 |
atggcgcaagtgagaaacaagcaagtgattttgagagactatgtgtctggttttcctaaggaatcagac |
2427620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 359
Target Start/End: Original strand, 11845932 - 11845972
Alignment:
| Q |
319 |
gaatcagacctcaacattgttgacagtaccataacactcaa |
359 |
Q |
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| T |
11845932 |
gaatcagacatgaacattgttgacagtaccataacattcaa |
11845972 |
T |
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