View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5988_low_11 (Length: 377)
Name: NF5988_low_11
Description: NF5988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5988_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 39 - 362
Target Start/End: Original strand, 10193912 - 10194235
Alignment:
| Q |
39 |
agtcttaattgacaaattaattttgtccattgagacagcaataaccatggcaaagggtaatgagggaaaaattaagacaaacaatgtcaacatgatggat |
138 |
Q |
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| T |
10193912 |
agtcttaattgacaaattaattttgtccattgagacagcaataaccatggcaaagggtaatgagggaaaaattaagacaaacaatgtcaacatgatggat |
10194011 |
T |
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| Q |
139 |
tctcattgttcaaatggaagccctaaaagtgaggtccaagactcaaagttcaagcacaaacatgtgtctaagaaaaggtatattggattaaattacaaaa |
238 |
Q |
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| T |
10194012 |
tctcattgttcaaatggaagccctaaaagtgaggtccaagactcaaagttcaagcacaaacatgtgtctaagaaaaggtatattggattaaattacaaaa |
10194111 |
T |
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| Q |
239 |
ttattgtttccttttgaacttagtggtgaatttccaaggttcacgatctcataattttcattattctttggaattttgtggtgcagaaaaaccgtgccta |
338 |
Q |
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| T |
10194112 |
ttattgtttccttttgaacttagtggtgaattttcaaggttcactatctcataattttcattattctttggaattttgtggtgcagaaaaaccgtgccta |
10194211 |
T |
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| Q |
339 |
agtggacagagcaagtgaaggttt |
362 |
Q |
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| T |
10194212 |
agtggacagagcaagtgaaggttt |
10194235 |
T |
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