View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5988_low_12 (Length: 359)

Name: NF5988_low_12
Description: NF5988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5988_low_12
NF5988_low_12
[»] chr3 (26 HSPs)
chr3 (244-344)||(39415638-39415739)
chr3 (244-344)||(42947813-42947914)
chr3 (100-182)||(35485563-35485645)
chr3 (100-182)||(42947682-42947764)
chr3 (100-182)||(53824609-53824691)
chr3 (245-344)||(25575120-25575220)
chr3 (244-339)||(53824747-53824843)
chr3 (97-182)||(2325289-2325375)
chr3 (244-341)||(35485698-35485796)
chr3 (244-341)||(42993970-42994068)
chr3 (244-344)||(44833879-44833980)
chr3 (102-182)||(44833746-44833826)
chr3 (112-182)||(42385507-42385577)
chr3 (244-341)||(16967511-16967608)
chr3 (244-341)||(2325154-2325251)
chr3 (113-174)||(25574996-25575057)
chr3 (113-174)||(39415515-39415576)
chr3 (100-182)||(42993833-42993917)
chr3 (244-333)||(47560088-47560176)
chr3 (110-174)||(16967669-16967733)
chr3 (114-174)||(48087013-48087073)
chr3 (244-341)||(42385343-42385442)
chr3 (244-302)||(48087135-48087194)
chr3 (112-174)||(8628599-8628661)
chr3 (290-333)||(32211458-32211501)
chr3 (35-63)||(8628523-8628551)
[»] scaffold0861 (2 HSPs)
scaffold0861 (244-344)||(3403-3504)
scaffold0861 (100-174)||(3566-3639)
[»] chr7 (23 HSPs)
chr7 (244-344)||(18239120-18239221)
chr7 (244-344)||(34354107-34354207)
chr7 (244-344)||(48218603-48218704)
chr7 (100-182)||(34354261-34354343)
chr7 (261-344)||(21154064-21154148)
chr7 (100-174)||(1536932-1537006)
chr7 (100-182)||(21153913-21153995)
chr7 (100-182)||(26502108-26502190)
chr7 (100-182)||(26590524-26590606)
chr7 (244-344)||(41219068-41219169)
chr7 (244-344)||(26501969-26502071)
chr7 (244-344)||(26590643-26590745)
chr7 (244-341)||(1536773-1536871)
chr7 (244-340)||(38791301-38791398)
chr7 (117-174)||(48218491-48218548)
chr7 (100-182)||(31825906-31825988)
chr7 (100-182)||(37524004-37524086)
chr7 (100-182)||(38791164-38791248)
chr7 (114-182)||(29714470-29714538)
chr7 (267-341)||(31823971-31824045)
chr7 (100-174)||(41219231-41219305)
chr7 (113-161)||(2913175-2913223)
chr7 (124-174)||(18239283-18239333)
[»] chr2 (23 HSPs)
chr2 (244-344)||(25685747-25685848)
chr2 (244-344)||(24937092-24937192)
chr2 (98-182)||(18394641-18394725)
chr2 (111-182)||(42121693-42121764)
chr2 (100-178)||(8556394-8556472)
chr2 (244-344)||(8556530-8556631)
chr2 (100-182)||(12967537-12967619)
chr2 (244-341)||(12967671-12967769)
chr2 (100-182)||(22495752-22495834)
chr2 (244-344)||(34403626-34403727)
chr2 (245-341)||(42121538-42121635)
chr2 (248-343)||(2154960-2155056)
chr2 (112-174)||(2155125-2155187)
chr2 (100-174)||(11713276-11713350)
chr2 (267-341)||(18394490-18394564)
chr2 (100-182)||(28266166-28266248)
chr2 (100-182)||(29132482-29132564)
chr2 (100-174)||(25685909-25685983)
chr2 (100-173)||(13785201-13785274)
chr2 (245-341)||(22495602-22495699)
chr2 (248-322)||(28268331-28268405)
chr2 (100-174)||(24937253-24937327)
chr2 (292-344)||(29132344-29132397)
[»] chr1 (31 HSPs)
chr1 (244-344)||(3659878-3659979)
chr1 (244-343)||(21483199-21483299)
chr1 (244-344)||(49597484-49597585)
chr1 (244-343)||(41872026-41872126)
chr1 (244-344)||(48567050-48567151)
chr1 (246-344)||(39222997-39223096)
chr1 (100-182)||(47485706-47485788)
chr1 (100-182)||(50065781-50065863)
chr1 (244-344)||(46178932-46179033)
chr1 (244-343)||(30308639-30308739)
chr1 (100-182)||(21483063-21483145)
chr1 (244-336)||(18171667-18171760)
chr1 (100-172)||(3660035-3660107)
chr1 (110-172)||(27033097-27033159)
chr1 (262-344)||(27033240-27033322)
chr1 (100-174)||(30308503-30308577)
chr1 (102-174)||(18171820-18171892)
chr1 (102-182)||(39650516-39650596)
chr1 (100-174)||(39222859-39222933)
chr1 (100-174)||(41871889-41871963)
chr1 (113-182)||(9343646-9343715)
chr1 (244-344)||(39650637-39650737)
chr1 (248-339)||(50065903-50065995)
chr1 (100-182)||(11012294-11012376)
chr1 (100-174)||(46923935-46924009)
chr1 (244-333)||(47485841-47485931)
chr1 (100-174)||(48566914-48566988)
chr1 (100-174)||(49597348-49597422)
chr1 (246-337)||(46924070-46924162)
chr1 (113-174)||(26013535-26013597)
chr1 (113-174)||(46178809-46178870)
[»] chr4 (38 HSPs)
chr4 (260-344)||(31823261-31823345)
chr4 (100-182)||(32935843-32935925)
chr4 (244-341)||(32935986-32936084)
chr4 (244-344)||(36174103-36174204)
chr4 (244-344)||(38131729-38131830)
chr4 (244-341)||(14329275-14329373)
chr4 (244-344)||(886723-886824)
chr4 (244-344)||(21712858-21712959)
chr4 (100-182)||(47043667-47043749)
chr4 (244-341)||(53266219-53266317)
chr4 (100-182)||(886877-886959)
chr4 (244-341)||(1227641-1227739)
chr4 (100-182)||(36174257-36174339)
chr4 (100-182)||(46814169-46814251)
chr4 (247-344)||(27760834-27760932)
chr4 (113-182)||(31936171-31936240)
chr4 (102-182)||(33161950-33162030)
chr4 (244-338)||(28797075-28797170)
chr4 (244-341)||(46814305-46814403)
chr4 (100-174)||(53266089-53266163)
chr4 (100-182)||(28796938-28797022)
chr4 (100-182)||(1227785-1227867)
chr4 (100-174)||(14329142-14329216)
chr4 (267-341)||(33162107-33162181)
chr4 (112-174)||(49065402-49065464)
chr4 (113-182)||(2778125-2778194)
chr4 (285-344)||(49065239-49065298)
chr4 (100-172)||(21713023-21713095)
chr4 (100-182)||(42039173-42039255)
chr4 (100-182)||(46567418-46567500)
chr4 (244-341)||(47043517-47043614)
chr4 (113-174)||(13867661-13867722)
chr4 (116-161)||(14990178-14990223)
chr4 (100-159)||(31823166-31823225)
chr4 (100-159)||(38131595-38131654)
chr4 (113-182)||(16524928-16524997)
chr4 (113-178)||(18414027-18414092)
chr4 (35-63)||(32935778-32935806)
[»] chr5 (29 HSPs)
chr5 (244-344)||(22706295-22706396)
chr5 (244-344)||(7083662-7083762)
chr5 (100-182)||(3461261-3461343)
chr5 (100-182)||(40017031-40017113)
chr5 (100-182)||(1974473-1974555)
chr5 (244-341)||(6271060-6271158)
chr5 (100-182)||(10532929-10533011)
chr5 (261-344)||(39223215-39223298)
chr5 (262-344)||(1172636-1172718)
chr5 (244-341)||(3461110-3461208)
chr5 (244-344)||(6427575-6427675)
chr5 (275-344)||(41758455-41758524)
chr5 (247-341)||(1974612-1974707)
chr5 (100-182)||(4846692-4846774)
chr5 (100-182)||(6270925-6271007)
chr5 (100-174)||(6427439-6427513)
chr5 (100-182)||(25898794-25898876)
chr5 (100-174)||(41758568-41758642)
chr5 (117-182)||(39223078-39223143)
chr5 (244-339)||(4846469-4846565)
chr5 (100-174)||(1172791-1172865)
chr5 (244-341)||(40016880-40016978)
chr5 (260-341)||(10533119-10533199)
chr5 (113-182)||(16101046-16101115)
chr5 (112-174)||(7083824-7083886)
chr5 (113-182)||(28784606-28784675)
chr5 (100-174)||(22706460-22706534)
chr5 (97-161)||(19044041-19044105)
chr5 (130-182)||(20202530-20202582)
[»] chr8 (11 HSPs)
chr8 (244-344)||(34471285-34471386)
chr8 (244-344)||(43635561-43635662)
chr8 (102-182)||(28704162-28704242)
chr8 (100-182)||(43635426-43635508)
chr8 (260-341)||(4640115-4640196)
chr8 (244-344)||(23542435-23542536)
chr8 (100-182)||(4639925-4640007)
chr8 (112-182)||(23542590-23542660)
chr8 (100-178)||(34471444-34471522)
chr8 (112-182)||(10829656-10829726)
chr8 (269-341)||(28704314-28704386)
[»] chr6 (15 HSPs)
chr6 (244-343)||(319517-319617)
chr6 (244-341)||(14830868-14830966)
chr6 (100-182)||(14153671-14153753)
chr6 (102-182)||(35053626-35053706)
chr6 (100-182)||(11718497-11718579)
chr6 (100-182)||(14830709-14830791)
chr6 (100-182)||(16444584-16444666)
chr6 (244-341)||(16444718-16444814)
chr6 (261-341)||(24173869-24173949)
chr6 (244-341)||(14153810-14153908)
chr6 (244-341)||(35053759-35053857)
chr6 (113-182)||(13312760-13312829)
chr6 (103-182)||(24173720-24173799)
chr6 (100-170)||(319381-319451)
chr6 (35-63)||(11718616-11718644)
[»] scaffold1455 (1 HSPs)
scaffold1455 (100-182)||(52-134)
[»] scaffold0223 (2 HSPs)
scaffold0223 (113-174)||(15936-15997)
scaffold0223 (288-333)||(15779-15824)


Alignment Details
Target: chr3 (Bit Score: 74; Significance: 7e-34; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 244 - 344
Target Start/End: Original strand, 39415638 - 39415739
Alignment:
Q  244 caatattctctttggag-caaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaatc 342  Q
    ||||||||||||||| | ||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  39415638 caatattctctttgggggcaaaagtgatcaaacttcttcggggtaaaatagtgagtagccgacttggggaagtgatcaacccttgggataagtttaaatc 39415737  T
Q  343 tg 344  Q
    ||    
T  39415738 tg 39415739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 244 - 344
Target Start/End: Original strand, 42947813 - 42947914
Alignment:
Q  244 caatattctctttggag-caaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaatc 342  Q
    ||||||||||||||| | ||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  42947813 caatattctctttgggggcaaaaatgatcaatcttcttaggggtaaaatagtgagtagccgacttggggaagtgatcaacccttgggataagtttaaatc 42947912  T
Q  343 tg 344  Q
    ||    
T  42947913 tg 42947914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 35485563 - 35485645
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    |||||||| ||||||| ||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||| |||||||    
T  35485563 acattaatggtgtttacaacctatactaccattcccacctataaatacccctccatacttccctaattcctcacaccatatca 35485645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 42947682 - 42947764
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    |||||||| ||||||| ||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||| |||||||    
T  42947682 acattaatggtgtttacaacctatactaccattcccacctataaatacccctccatacttccctaattcctcacaccatatca 42947764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 53824609 - 53824691
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    |||||||| ||||||| ||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||| |||||||    
T  53824609 acattaatcgtgtttacaacctatactaccattcccacctataaatacccctccatacttccctaattcctcacaccatatca 53824691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 245 - 344
Target Start/End: Original strand, 25575120 - 25575220
Alignment:
Q  245 aatattctctttggag-caaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaatct 343  Q
    |||||||||||||| | ||||| ||||||| |||||||||||||||||||| |||| ||||||||| ||||||||| |||| | |||| |||||||||||    
T  25575120 aatattctctttgggggcaaaagtgatcaaacttcttcggggtaaaatagtaagtacccgacttggggaagtgatcgacccttaggatgagtttaaatct 25575219  T
Q  344 g 344  Q
    |    
T  25575220 g 25575220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 244 - 339
Target Start/End: Original strand, 53824747 - 53824843
Alignment:
Q  244 caatattctctttggag-caaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaa 339  Q
    ||||||||||||||| | ||||| ||||||| |||| |||||||||||||||||| ||||||| ||| ||||||||| |||| ||||||||||||||    
T  53824747 caatattctctttgggggcaaaagtgatcaatcttcatcggggtaaaatagtgagaagccgacatggggaagtgatcgacccttgggataagtttaa 53824843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 97 - 182
Target Start/End: Complemental strand, 2325375 - 2325289
Alignment:
Q  97 acaacattaatagtgtttataacctatactaccattctcacctataaatactcct-ccatacttccttaattcctcacatcatatca 182  Q
    ||||||||||| ||||||| |||| |||||||||||| ||||||||||||||||| |||||||| | |||||||||||| |||||||    
T  2325375 acaacattaatggtgtttacaaccaatactaccattcccacctataaatactcctcccatactttcctaattcctcacaccatatca 2325289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 244 - 341
Target Start/End: Original strand, 35485698 - 35485796
Alignment:
Q  244 caatattctctttggag-caaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaat 341  Q
    ||||||||||||||| | ||||| ||||||| |||| |||||||||||||||||| ||||||| ||| ||||||||| |||| ||||| ||||||||||    
T  35485698 caatattctctttgggggcaaaagtgatcaatcttcgtcggggtaaaatagtgagaagccgacatggggaagtgatcgacccttgggaaaagtttaaat 35485796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 244 - 341
Target Start/End: Original strand, 42993970 - 42994068
Alignment:
Q  244 caatattctctttggag-caaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaat 341  Q
    ||||||||||||||| | ||||| ||||||| |||| |||||||||||||||||| ||||||| ||| ||||||||| |||| | ||||||||||||||    
T  42993970 caatattctctttgggggcaaaagtgatcaatcttcgtcggggtaaaatagtgagaagccgacatggggaagtgatcgaccctttggataagtttaaat 42994068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 244 - 344
Target Start/End: Original strand, 44833879 - 44833980
Alignment:
Q  244 caatattctctttggag-caaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaatc 342  Q
    |||||||||||| |||| ||||| |||| || |||| ||||||||||||||||||||||||| ||||  |||||| | |||| |||||||||||||||||    
T  44833879 caatattctcttcggaggcaaaagtgataaatcttcgtcggggtaaaatagtgagtagccgatttgggaaagtgaccgacccttgggataagtttaaatc 44833978  T
Q  343 tg 344  Q
    ||    
T  44833979 tg 44833980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 102 - 182
Target Start/End: Original strand, 44833746 - 44833826
Alignment:
Q  102 attaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    |||||| ||||||| ||||||||||||||||  |||||||||||||  |||||||||||| |||||||||||| |||||||    
T  44833746 attaatggtgtttacaacctatactaccatttgcacctataaataccgctccatacttccctaattcctcacaccatatca 44833826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 112 - 182
Target Start/End: Complemental strand, 42385577 - 42385507
Alignment:
Q  112 tttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    |||| ||||||||||||||||  ||||||||||||||| ||||||||||| |||||||| |||||||||||    
T  42385577 tttacaacctatactaccatttccacctataaatactcatccatacttccctaattcctgacatcatatca 42385507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 244 - 341
Target Start/End: Complemental strand, 16967608 - 16967511
Alignment:
Q  244 caatattctctttggagcaaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaat 341  Q
    |||||||||||| || ||||||  |||||| |||| || ||||||||||||||| ||||||| ||| ||||||||| |||  ||||||||||||||||    
T  16967608 caatattctcttgggggcaaaagagatcaatcttcgtcagggtaaaatagtgagaagccgacatggggaagtgatcgaccattgggataagtttaaat 16967511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 244 - 341
Target Start/End: Complemental strand, 2325251 - 2325154
Alignment:
Q  244 caatattctctttggag-caaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaat 341  Q
    ||||||||||||||| | ||||| ||||||| ||||||  || |||||||||||| |||||||||||  |||||||| |||| ||||||||||||||||    
T  2325251 caatattctctttgggggcaaaagtgatcaatcttcttaagg-taaaatagtgagcagccgacttgggaaagtgatcgacccttgggataagtttaaat 2325154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 113 - 174
Target Start/End: Original strand, 25574996 - 25575057
Alignment:
Q  113 ttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcaca 174  Q
    ||||||| || |||||||||| ||||||||||||||||||||||||||| || |||||||||    
T  25574996 ttataacatacactaccattcccacctataaatactcctccatacttccctatttcctcaca 25575057  T

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Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 113 - 174
Target Start/End: Original strand, 39415515 - 39415576
Alignment:
Q  113 ttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcaca 174  Q
    |||||||||| |||||||||| ||||||||||||| ||||||||||||| || |||||||||    
T  39415515 ttataacctacactaccattcccacctataaatacccctccatacttccctatttcctcaca 39415576  T

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Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 42993833 - 42993917
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctata--aatactcctccatacttccttaattcctcacatcatatca 182  Q
    ||||||||  |||||| ||||||||||||||||  ||||||||  ||||| ||||||||||||| |||||||||||| |||||||    
T  42993833 acattaatgatgtttacaacctatactaccatttccacctatataaatacccctccatacttccctaattcctcacaccatatca 42993917  T

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Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 244 - 333
Target Start/End: Complemental strand, 47560176 - 47560088
Alignment:
Q  244 caatattctctttggagcaaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataa 333  Q
    ||||| ||||||||| |||||| ||||||  |||||| |||| |||||||||||||||||| |||| ||||| |||||||| ||||||||    
T  47560176 caatagtctctttggggcaaaagtgatcagacttctt-ggggcaaaatagtgagtagccgatttggggaagtaatcaacccttgggataa 47560088  T

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Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 16967733 - 16967669
Alignment:
Q  110 tgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcaca 174  Q
    |||||| ||||||||||||||||| || |||||||||| ||||||||||||| |||||| |||||    
T  16967733 tgtttacaacctatactaccattcccatctataaatacccctccatacttccctaattcgtcaca 16967669  T

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Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 48087013 - 48087073
Alignment:
Q  114 tataacctatactaccattctcacctataaatactcctccatacttccttaattcctcaca 174  Q
    ||||||||| |||||||||| ||||||||||||| ||||||||||||| || |||||||||    
T  48087013 tataacctacactaccattcccacctataaatacccctccatacttccctatttcctcaca 48087073  T

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Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 341
Target Start/End: Complemental strand, 42385442 - 42385343
Alignment:
Q  244 caatattctctttggag-caaaaatgatcaagcttcttcgggg-taaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaat 341  Q
    ||||||||||||||| | ||||  ||||||| ||||||||||| ||| |||||||| ||||||| ||| ||||||||| | || ||||||||||||||||    
T  42385442 caatattctctttggggacaaaggtgatcaaacttcttcgggggtaagatagtgagaagccgacatggggaagtgatcgatccttgggataagtttaaat 42385343  T

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Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 302
Target Start/End: Original strand, 48087135 - 48087194
Alignment:
Q  244 caatattctctttggag-caaaaatgatcaagcttcttcggggtaaaatagtgagtagcc 302  Q
    ||||||||||||||| | ||||| ||||||| ||||||| ||||||||||||||||||||    
T  48087135 caatattctctttgggggcaaaagtgatcaaacttcttcagggtaaaatagtgagtagcc 48087194  T

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Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 8628599 - 8628661
Alignment:
Q  112 tttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcaca 174  Q
    |||| ||||||||||||||||| ||||||||||||  ||||||||||||| || || ||||||    
T  8628599 tttacaacctatactaccattcccacctataaatatccctccatacttccctatttactcaca 8628661  T

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Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 290 - 333
Target Start/End: Original strand, 32211458 - 32211501
Alignment:
Q  290 atagtgagtagccgacttggagaagtgatcaacccatgggataa 333  Q
    |||||||||||||||||||| |||||||||||| | ||||||||    
T  32211458 atagtgagtagccgacttggggaagtgatcaacacttgggataa 32211501  T

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Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 63
Target Start/End: Original strand, 8628523 - 8628551
Alignment:
Q  35 tttggtcagtttttcaacattcaatctac 63  Q
    |||||||||||||||||||||||||||||    
T  8628523 tttggtcagtttttcaacattcaatctac 8628551  T

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Target: scaffold0861 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: scaffold0861
Description:

Target: scaffold0861; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 244 - 344
Target Start/End: Complemental strand, 3504 - 3403
Alignment:
Q  244 caatattctctttggagcaaaaa-tgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaatc 342  Q
    ||||||||||||||| | ||||| ||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||    
T  3504 caatattctctttgggggaaaaagtgatcaaacttcttcggggtaaaatagtgagtagccgacctggggaagtgatcaacccttgggataagtttaaatc 3405  T
Q  343 tg 344  Q
    ||    
T  3404 tg 3403  T

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Target: scaffold0861; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 100 - 174
Target Start/End: Complemental strand, 3639 - 3566
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcaca 174  Q
    |||||||| || |||| ||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||    
T  3639 acattaatggtatttaaaacctatactaccattc-cacctataaatacccctccatacttccctaattcctcaca 3566  T

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Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 244 - 344
Target Start/End: Complemental strand, 18239221 - 18239120
Alignment:
Q  244 caatattctctttggag-caaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaatc 342  Q
    ||||||||||||||| | ||||| ||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||    
T  18239221 caatattctctttgggggcaaaagtgatcaaacttcttcggggtaaaatagtgagtcgccgacttggggaagtgatcaacccttgggataagtttaaatc 18239122  T
Q  343 tg 344  Q
    ||    
T  18239121 tg 18239120  T

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Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 244 - 344
Target Start/End: Complemental strand, 34354207 - 34354107
Alignment:
Q  244 caatattctctttggagcaaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaatct 343  Q
    |||||||||||||||   |||| ||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||    
T  34354207 caatattctctttgggaaaaaagtgatcaaacttcttcgaggtaaaatagtgagtagccgacttggggaagtgatcaaccattgggataagtttaaatct 34354108  T
Q  344 g 344  Q
    |    
T  34354107 g 34354107  T

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Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 244 - 344
Target Start/End: Original strand, 48218603 - 48218704
Alignment:
Q  244 caatattctctttggag-caaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaatc 342  Q
    ||||||||| ||||| | ||||| ||||||| ||||||||||||||||||||| ||||||||||||| ||||||||| |||| |||||||||||||||||    
T  48218603 caatattctgtttgggggcaaaagtgatcaaacttcttcggggtaaaatagtgggtagccgacttggggaagtgatcgacccttgggataagtttaaatc 48218702  T
Q  343 tg 344  Q
    ||    
T  48218703 tg 48218704  T

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Target: chr7; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 100 - 182
Target Start/End: Complemental strand, 34354343 - 34354261
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    |||||||| || |||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||    
T  34354343 acattaatggtctttacaacctatactaccattctcacctataaatacccctccatacttccctaattcctcacaccatatca 34354261  T

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Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 261 - 344
Target Start/End: Original strand, 21154064 - 21154148
Alignment:
Q  261 caaaaatgatcaagcttcttc-ggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaatctg 344  Q
    ||||| ||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||    
T  21154064 caaaagtgatcaaacttcttcaggggtaaaatagtgagtagccgacttggggaagtgatcaacctttgggataagtttaaatctg 21154148  T

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Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 100 - 174
Target Start/End: Complemental strand, 1537006 - 1536932
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcaca 174  Q
    |||||||| ||||||| ||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||    
T  1537006 acattaatggtgtttacaacctatactaccattcccacctataaatacccctccatacttccctaattcctcaca 1536932  T

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Target: chr7; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 21153913 - 21153995
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    |||||||| ||||||||||||||||||||||||| | ||||||||||| ||||||||||||| || ||||||||| |||||||    
T  21153913 acattaattgtgtttataacctatactaccattcccgcctataaatacccctccatacttccctatttcctcacaccatatca 21153995  T

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Target: chr7; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 100 - 182
Target Start/End: Complemental strand, 26502190 - 26502108
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    |||||||| ||||||| ||||||||||||||||| | ||||||||||| ||||||||||||| |||||||||||| |||||||    
T  26502190 acattaattgtgtttacaacctatactaccattcccccctataaatacccctccatacttccctaattcctcacaacatatca 26502108  T

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Target: chr7; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 26590524 - 26590606
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    |||||||| ||||||| ||||||||||||||||| | ||||||||||| ||||||||||||| |||||||||||| |||||||    
T  26590524 acattaattgtgtttacaacctatactaccattcccccctataaatacccctccatacttccctaattcctcacaacatatca 26590606  T

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Target: chr7; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 244 - 344
Target Start/End: Complemental strand, 41219169 - 41219068
Alignment:
Q  244 caatattctctttggag-caaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaatc 342  Q
    ||||||||||||||| | ||||| ||||||| |||||||| ||||||| ||||||||| |||||||| ||| |||||||||| || ||||||||||||||    
T  41219169 caatattctctttgggggcaaaagtgatcaaacttcttcgaggtaaaacagtgagtagtcgacttggggaactgatcaacccttgagataagtttaaatc 41219070  T
Q  343 tg 344  Q
    ||    
T  41219069 tg 41219068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 244 - 344
Target Start/End: Complemental strand, 26502071 - 26501969
Alignment:
Q  244 caatattctctttggagcaaaaa--tgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaat 341  Q
    ||||||||||||||| |  ||||  |||||||  ||| |||||||||||||||||||||||||||||| ||||||||| |||| || |||||||||||||    
T  26502071 caatattctctttggggggaaaaagtgatcaatattcgtcggggtaaaatagtgagtagccgacttggggaagtgatcgacccttgagataagtttaaat 26501972  T
Q  342 ctg 344  Q
    |||    
T  26501971 ctg 26501969  T

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Target: chr7; HSP #12
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 244 - 344
Target Start/End: Original strand, 26590643 - 26590745
Alignment:
Q  244 caatattctctttggagcaaaaa--tgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaat 341  Q
    ||||||||||||||| |  ||||  |||||||  ||| |||||||||||||||||||||||||||||| ||||||||| |||| || |||||||||||||    
T  26590643 caatattctctttggggggaaaaagtgatcaatattcgtcggggtaaaatagtgagtagccgacttggggaagtgatcgacccttgagataagtttaaat 26590742  T
Q  342 ctg 344  Q
    |||    
T  26590743 ctg 26590745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 244 - 341
Target Start/End: Complemental strand, 1536871 - 1536773
Alignment:
Q  244 caatattctctttggag-caaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaat 341  Q
    ||||||||| ||||| | ||||| ||||||| |||| |||||||||||||||||| ||||||| ||||||||||||| |||  ||||||||||||||||    
T  1536871 caatattctttttgggggcaaaagtgatcaatcttcgtcggggtaaaatagtgagaagccgacatggagaagtgatcgaccattgggataagtttaaat 1536773  T

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Target: chr7; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 244 - 340
Target Start/End: Original strand, 38791301 - 38791398
Alignment:
Q  244 caatattctctttggag-caaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaa 340  Q
    ||||||||||||||| | ||||| ||||||| |||| ||| ||||||||||||||| || ||||||| ||||||||| |||| |||||||||||||||    
T  38791301 caatattctctttgggggcaaaagtgatcaatcttcgtcgaggtaaaatagtgagttgctgacttggggaagtgatcgacccttgggataagtttaaa 38791398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 117 - 174
Target Start/End: Original strand, 48218491 - 48218548
Alignment:
Q  117 aacctatactaccattctcacctataaatactcctccatacttccttaattcctcaca 174  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  48218491 aacctatactaccattctcacctataaatacccctccatacttccctaattcctcaca 48218548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 100 - 182
Target Start/End: Complemental strand, 31825988 - 31825906
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    |||||||| ||||||| ||||||||||||||||  ||||||||||||| ||||||||||| | ||||| |||||| |||||||    
T  31825988 acattaatggtgtttacaacctatactaccatttccacctataaatacccctccatactttcctaatttctcacaccatatca 31825906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 100 - 182
Target Start/End: Complemental strand, 37524086 - 37524004
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    |||||||| || |||| ||||||||||||||||| ||||||||||||| ||||||||||||  ||||| |||||| |||||||    
T  37524086 acattaatggtatttaaaacctatactaccattcccacctataaatacccctccatacttctctaatttctcacaccatatca 37524004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 38791164 - 38791248
Alignment:
Q  100 acattaatagtgtttataacctatactacc--attctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    ||||||||  |||||| |||||||||||||  |||||||||||||||||  ||||||||||||| |||||||||||| |||||||    
T  38791164 acattaatgatgtttacaacctatactacctaattctcacctataaatatccctccatacttccctaattcctcacaccatatca 38791248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 114 - 182
Target Start/End: Original strand, 29714470 - 29714538
Alignment:
Q  114 tataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    |||||||||||| ||||||| ||||||||||||| ||||||||||| |||| ||||||||| |||||||    
T  29714470 tataacctataccaccattcccacctataaatacccctccatactttcttatttcctcacaccatatca 29714538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 267 - 341
Target Start/End: Complemental strand, 31824045 - 31823971
Alignment:
Q  267 tgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaat 341  Q
    ||||||| |||| |||||||||||||||||| ||||||| ||| ||||||||| | || ||||||||||||||||    
T  31824045 tgatcaatcttcgtcggggtaaaatagtgagaagccgacatggggaagtgatcgatccttgggataagtttaaat 31823971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 174
Target Start/End: Complemental strand, 41219305 - 41219231
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcaca 174  Q
    ||||| || ||| |||||||||| |||||||||| ||||||||||||| ||||| ||||||| || || ||||||    
T  41219305 acatttatggtggttataacctacactaccattcccacctataaatacccctccttacttccctattttctcaca 41219231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 2913223 - 2913175
Alignment:
Q  113 ttataacctatactaccattctcacctataaatactcctccatacttcc 161  Q
    |||||||||||| |||||||||||||||||||||  |||||| ||||||    
T  2913223 ttataacctatattaccattctcacctataaatatccctccaaacttcc 2913175  T

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Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 174
Target Start/End: Complemental strand, 18239333 - 18239283
Alignment:
Q  124 actaccattctcacctataaatactcctccatacttccttaattcctcaca 174  Q
    |||| ||||| ||||||||||||| ||||||||||||| || |||||||||    
T  18239333 actatcattcccacctataaatacccctccatacttccctatttcctcaca 18239283  T

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Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 244 - 344
Target Start/End: Complemental strand, 25685848 - 25685747
Alignment:
Q  244 caatattctctttggag-caaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaatc 342  Q
    ||||||||||||||| | ||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||    
T  25685848 caatattctctttgggggcaaaagtgatcaaacttcttcggggtaaaatagtgagtagccgacttggggaagtgatcaacccttgggataaatttaaatc 25685749  T
Q  343 tg 344  Q
    ||    
T  25685748 tg 25685747  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 244 - 344
Target Start/End: Complemental strand, 24937192 - 24937092
Alignment:
Q  244 caatattctctttggagcaaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaatct 343  Q
    ||||||||||||||| |||||| ||||||| |||||||||||||||||||||| ||| |||||| | |||||||||||||| |||||||| |||||||||    
T  24937192 caatattctctttggggcaaaagtgatcaaacttcttcggggtaaaatagtgactagtcgacttagggaagtgatcaacccttgggataaatttaaatct 24937093  T
Q  344 g 344  Q
    |    
T  24937092 g 24937092  T

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Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 98 - 182
Target Start/End: Complemental strand, 18394725 - 18394641
Alignment:
Q  98 caacattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    |||||||||| ||||||| ||||||||||||||||  ||||||||||||| ||||||||||||| |||||||||||| |||||||    
T  18394725 caacattaatggtgtttacaacctatactaccatttccacctataaatacccctccatacttccctaattcctcacaccatatca 18394641  T

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Target: chr2; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 111 - 182
Target Start/End: Complemental strand, 42121764 - 42121693
Alignment:
Q  111 gtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    ||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||    
T  42121764 gtttacaacctatactaccattcccacctataaatacccctccatacttccttaattcctcacaccatatca 42121693  T

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Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 100 - 178
Target Start/End: Original strand, 8556394 - 8556472
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcat 178  Q
    |||||||| || |||||||||||||||||||||  ||||||||||||| ||||||||||||| ||||||||||||||||    
T  8556394 acattaatggtatttataacctatactaccatttccacctataaatacccctccatacttccataattcctcacatcat 8556472  T

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Target: chr2; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 244 - 344
Target Start/End: Original strand, 8556530 - 8556631
Alignment:
Q  244 caatattctctttggag-caaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaatc 342  Q
    ||||||||||||||| | ||||| ||||||| |||| |||||||||||||||||||||||||| ||| ||||||||| ||   |||||||||||||||||    
T  8556530 caatattctctttgggggcaaaagtgatcaatcttcgtcggggtaaaatagtgagtagccgacatggggaagtgatcgactgttgggataagtttaaatc 8556629  T
Q  343 tg 344  Q
    ||    
T  8556630 tg 8556631  T

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Target: chr2; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 12967537 - 12967619
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    ||||||||  |||||| ||||||||||||||||| ||||||||||||| ||||||||||||  |||||||||||| |||||||    
T  12967537 acattaatgatgtttacaacctatactaccattcccacctataaatacccctccatacttcactaattcctcacaccatatca 12967619  T

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Target: chr2; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 244 - 341
Target Start/End: Original strand, 12967671 - 12967769
Alignment:
Q  244 caatattctctttggag-caaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaat 341  Q
    ||||||||||||||| | |||||||| |||| |||| || |||||||||| |||||||||||| ||| ||||||||| |||| ||||||||||||||||    
T  12967671 caatattctctttgggggcaaaaatgttcaatcttcgtcagggtaaaataatgagtagccgacatggggaagtgatcgacccttgggataagtttaaat 12967769  T

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Target: chr2; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 100 - 182
Target Start/End: Complemental strand, 22495834 - 22495752
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    |||||||| ||||||| || |||||||||||||| ||||||||||||| ||| ||||||||| |||||||||||| |||||||    
T  22495834 acattaatggtgtttacaatctatactaccattcccacctataaataccccttcatacttccctaattcctcacaccatatca 22495752  T

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Target: chr2; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 244 - 344
Target Start/End: Original strand, 34403626 - 34403727
Alignment:
Q  244 caatattctcttt-ggagcaaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaatc 342  Q
    ||||||||||||| || |||||| ||||||| ||| || ||||||||||||||||||||||| |||| |||||||||||||  |  ||||||||||||||    
T  34403626 caatattctctttaggggcaaaagtgatcaaacttttttggggtaaaatagtgagtagccgatttggtgaagtgatcaaccattctgataagtttaaatc 34403725  T
Q  343 tg 344  Q
    ||    
T  34403726 tg 34403727  T

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Target: chr2; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 245 - 341
Target Start/End: Complemental strand, 42121635 - 42121538
Alignment:
Q  245 aatattctctttggagcaaaaa-tgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaat 341  Q
    |||||||||||||  | ||||| ||||||| |||| |||||||||||||||||| ||||||| |||| |||||||| |||| ||||||||||||||||    
T  42121635 aatattctctttgtgggaaaaagtgatcaatcttcgtcggggtaaaatagtgagaagccgacatggaaaagtgatcgacccttgggataagtttaaat 42121538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 248 - 343
Target Start/End: Complemental strand, 2155056 - 2154960
Alignment:
Q  248 attctctttggag-caaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaatct 343  Q
    ||||||||||| | ||||| | ||||| |||| |||||||||||||||||||||||||| ||| ||||||||||| || || |||||||||||||||    
T  2155056 attctctttgggggcaaaagttatcaaacttcgtcggggtaaaatagtgagtagccgacatggggaagtgatcaatccttgagataagtttaaatct 2154960  T

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Target: chr2; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 2155187 - 2155125
Alignment:
Q  112 tttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcaca 174  Q
    |||| ||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||    
T  2155187 tttacaacctatactaccattctcacctataaataccccttcatacttccctaattcctcaca 2155125  T

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Target: chr2; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 100 - 174
Target Start/End: Original strand, 11713276 - 11713350
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcaca 174  Q
    |||||||| ||||||| ||||||||||||||||| ||||||||||||| ||| ||| ||||| ||||||||||||    
T  11713276 acattaatggtgtttacaacctatactaccattcccacctataaataccccttcatgcttccctaattcctcaca 11713350  T

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Target: chr2; HSP #15
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 267 - 341
Target Start/End: Complemental strand, 18394564 - 18394490
Alignment:
Q  267 tgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaat 341  Q
    ||||||| ||||||||| ||||||||||||| | ||||| ||||||||||||| |||| ||||||||||||||||    
T  18394564 tgatcaaacttcttcggagtaaaatagtgagaaaccgacatggagaagtgatcgacccttgggataagtttaaat 18394490  T

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Target: chr2; HSP #16
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 28266166 - 28266248
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    ||||||||  |||||||| ||||||||||||||| || |||||||||  | |||||||||||||||||||||||| |||||||    
T  28266166 acattaatgatgtttatatcctatactaccattcccatctataaatatccttccatacttccttaattcctcacaccatatca 28266248  T

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Target: chr2; HSP #17
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 100 - 182
Target Start/End: Complemental strand, 29132564 - 29132482
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    |||||||| || |||| |||||||| || ||||| ||||||||||||| ||||||||||||| |||||||||||| |||||||    
T  29132564 acattaatggtatttacaacctatattatcattcccacctataaatacccctccatacttccctaattcctcacaacatatca 29132482  T

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Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 174
Target Start/End: Complemental strand, 25685983 - 25685909
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcaca 174  Q
    ||||| || ||| |||||||||| |||||||||| ||||||||||||| ||||||||||||| || |||||||||    
T  25685983 acatttatggtggttataacctacactaccattcccacctataaatacccctccatacttccctatttcctcaca 25685909  T

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Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 100 - 173
Target Start/End: Original strand, 13785201 - 13785274
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcac 173  Q
    ||||| || ||| ||||||||||||||||||||| ||||||||||||| ||||||||||| | || ||||||||    
T  13785201 acatttatggtggttataacctatactaccattcccacctataaatacccctccatactttcctatttcctcac 13785274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 245 - 341
Target Start/End: Complemental strand, 22495699 - 22495602
Alignment:
Q  245 aatattctctttggag-caaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaat 341  Q
    |||||||||||||| | ||||| ||||||| | || |||||||||||||| ||| ||||||| ||| ||||||||  |||| ||||||||||||||||    
T  22495699 aatattctctttgggggcaaaagtgatcaatcatcgtcggggtaaaatagcgagaagccgacatggggaagtgattgacccttgggataagtttaaat 22495602  T

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Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 248 - 322
Target Start/End: Original strand, 28268331 - 28268405
Alignment:
Q  248 attctctttggagcaaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaac 322  Q
    ||||||||||| |||||| ||||||| ||| |||||| |||||| |||||||||||| || | ||||||||||||    
T  28268331 attctctttggggcaaaagtgatcaaactttttcgggataaaatggtgagtagccgattttgggaagtgatcaac 28268405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 174
Target Start/End: Complemental strand, 24937327 - 24937253
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcaca 174  Q
    ||||| || ||| |||||||||| |||| ||||| ||||||||||||| ||||||||||||| || || ||||||    
T  24937327 acatttatggtggttataacctacactatcattcccacctataaatacccctccatacttccctattttctcaca 24937253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 292 - 344
Target Start/End: Complemental strand, 29132397 - 29132344
Alignment:
Q  292 agtgagtagccgacttgg-agaagtgatcaacccatgggataagtttaaatctg 344  Q
    |||||||||||||||||| ||||||||||||||| | |||||||||| ||||||    
T  29132397 agtgagtagccgacttgggagaagtgatcaacccttaggataagttttaatctg 29132344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 244 - 344
Target Start/End: Complemental strand, 3659979 - 3659878
Alignment:
Q  244 caatattctctttggagcaaaaa-tgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaatc 342  Q
    ||||||||||||||| |  |||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||    
T  3659979 caatattctctttggggggaaaagtgatcaagcttcttcggggtaaaatagtgagtagccgacctggggaagtgatcaacccttgggataagtttaaatc 3659880  T
Q  343 tg 344  Q
    ||    
T  3659879 tg 3659878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 244 - 343
Target Start/End: Original strand, 21483199 - 21483299
Alignment:
Q  244 caatattctctttggag-caaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaatc 342  Q
    ||||||||||||||| | ||||| ||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  21483199 caatattctctttgggggcaaaagtgatcaaacttcttcagggtaaaatagtgagtagccgacctggagaagtgatcaacccttgggataagtttaaatc 21483298  T
Q  343 t 343  Q
    |    
T  21483299 t 21483299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 244 - 344
Target Start/End: Original strand, 49597484 - 49597585
Alignment:
Q  244 caatattctctttggag-caaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaatc 342  Q
    ||||||||||||||| | ||||| ||||||| |||||||||||||||||||||||||| |||||||| ||||||||| |||| |||||||||||||||||    
T  49597484 caatattctctttgggggcaaaagtgatcaaacttcttcggggtaaaatagtgagtagtcgacttggggaagtgatcgacccttgggataagtttaaatc 49597583  T
Q  343 tg 344  Q
    ||    
T  49597584 tg 49597585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 244 - 343
Target Start/End: Original strand, 41872026 - 41872126
Alignment:
Q  244 caatattctctttg-gagcaaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaatc 342  Q
    |||||||||||||| | |||||| |||| || |||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  41872026 caatattctctttgagggcaaaagtgattaaacttctttggggtaaaatagtgagtagccgacttggggaagtgatcaacccttgggataagtttaaatc 41872125  T
Q  343 t 343  Q
    |    
T  41872126 t 41872126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 244 - 344
Target Start/End: Original strand, 48567050 - 48567151
Alignment:
Q  244 caatattctctttggag-caaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaatc 342  Q
    ||||| ||||||||| | ||||| ||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||    
T  48567050 caatactctctttgggggcaaaagtgatcaaacttcttctgggtaaaatagtgagtagccgacttggggaagtgatcaacccttgggatatgtttaaatc 48567149  T
Q  343 tg 344  Q
    ||    
T  48567150 tg 48567151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 246 - 344
Target Start/End: Original strand, 39222997 - 39223096
Alignment:
Q  246 atattctctttggag-caaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaatctg 344  Q
    ||||||||||||| | ||||| ||||||| |||| |||||||||||||||||||||||||| ||| ||||||| |||||| |||||||||||||||||||    
T  39222997 atattctctttgggggcaaaagtgatcaatcttcgtcggggtaaaatagtgagtagccgacatggggaagtgaacaacccttgggataagtttaaatctg 39223096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 47485706 - 47485788
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    |||||||| ||||||| ||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||| |||||||    
T  47485706 acattaatggtgtttacaacctatactaccattcccacctataaatacccctccatacttccctaattcctcacaccatatca 47485788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 50065781 - 50065863
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    |||||||| ||||||| ||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||| |||||||    
T  50065781 acattaatggtgtttacaacctatactaccattcccacctataaatacccctccatacttccctaattcctcacaccatatca 50065863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 244 - 344
Target Start/End: Original strand, 46178932 - 46179033
Alignment:
Q  244 caatattctctttggag-caaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaatc 342  Q
    ||||||||||||||| | ||||| || |||| |||||||||||||||||||||||||||| |||||| ||||||||| |||| | |||||||||||||||    
T  46178932 caatattctctttgggggcaaaagtggtcaaacttcttcggggtaaaatagtgagtagccaacttggggaagtgatcgacccttcggataagtttaaatc 46179031  T
Q  343 tg 344  Q
    ||    
T  46179032 tg 46179033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 244 - 343
Target Start/End: Original strand, 30308639 - 30308739
Alignment:
Q  244 caatattctctttggag-caaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaatc 342  Q
    ||||||||||||| | | ||||| ||||||| |||| |||||||||||||||||||||||||| ||| |||||||||||||  |||||||||||||||||    
T  30308639 caatattctctttcgggacaaaagtgatcaatcttcgtcggggtaaaatagtgagtagccgacatggggaagtgatcaaccattgggataagtttaaatc 30308738  T
Q  343 t 343  Q
    |    
T  30308739 t 30308739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 21483063 - 21483145
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    |||||||| || |||| ||||||||||||||||| ||| ||||||||| ||||||||||||| |||||||||||| |||||||    
T  21483063 acattaatggtatttacaacctatactaccattcccacatataaatacccctccatacttccctaattcctcacaccatatca 21483145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 244 - 336
Target Start/End: Complemental strand, 18171760 - 18171667
Alignment:
Q  244 caatattctctttggag-caaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtt 336  Q
    ||||||||||||||| | ||||| ||||||| |||||||||||||||| ||| |||||||||||||| ||||||||| || | |||||||||||    
T  18171760 caatattctctttgggggcaaaagtgatcaatcttcttcggggtaaaacagtaagtagccgacttggggaagtgatcgacgcttgggataagtt 18171667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 100 - 172
Target Start/End: Complemental strand, 3660107 - 3660035
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctca 172  Q
    |||||||| || |||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||    
T  3660107 acattaatggtatttacaacctatactaccattcccacctataaatactcctccatacttccctaatttctca 3660035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 110 - 172
Target Start/End: Original strand, 27033097 - 27033159
Alignment:
Q  110 tgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctca 172  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||||  |||||||||    
T  27033097 tgtttataacctatactatcattctcacctataaatacccctccatacttcccgaattcctca 27033159  T

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Target: chr1; HSP #15
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 262 - 344
Target Start/End: Original strand, 27033240 - 27033322
Alignment:
Q  262 aaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaatctg 344  Q
    |||| ||| ||| |||||| |||||||||||||||||||| ||||||| ||||||||| || | |||||||||||||||||||    
T  27033240 aaaagtgagcaaacttctttggggtaaaatagtgagtagctgacttggggaagtgatcgactcttgggataagtttaaatctg 27033322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 100 - 174
Target Start/End: Original strand, 30308503 - 30308577
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcaca 174  Q
    |||||||| || |||| ||||||||||||||||| ||||||||||||| |||| |||||||| ||||||||||||    
T  30308503 acattaatggtatttacaacctatactaccattcccacctataaatacccctcaatacttccctaattcctcaca 30308577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 102 - 174
Target Start/End: Complemental strand, 18171892 - 18171820
Alignment:
Q  102 attaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcaca 174  Q
    |||||| ||||||| ||||||||||||||||| ||| ||||||||  ||||||||||||| ||||||||||||    
T  18171892 attaatggtgtttacaacctatactaccattcccacttataaatatccctccatacttccctaattcctcaca 18171820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 102 - 182
Target Start/End: Original strand, 39650516 - 39650596
Alignment:
Q  102 attaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    |||||| ||||||| ||| ||||||| ||||| ||||||||||||| ||| ||||||||| |||||||||||| |||||||    
T  39650516 attaatggtgtttacaacatatactatcattcccacctataaataccccttcatacttccctaattcctcacaccatatca 39650596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 174
Target Start/End: Original strand, 39222859 - 39222933
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcaca 174  Q
    |||||||| || |||  ||||||||||||||||| ||| ||||||||| ||||||||||||| ||||||||||||    
T  39222859 acattaatggtattttcaacctatactaccattcccacgtataaatacccctccatacttccctaattcctcaca 39222933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 174
Target Start/End: Original strand, 41871889 - 41871963
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcaca 174  Q
    ||||| || ||| |||||||||| |||||||||| ||||||||||||| ||||||||||||| || |||||||||    
T  41871889 acatttatggtggttataacctacactaccattcccacctataaatacccctccatacttccctatttcctcaca 41871963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 113 - 182
Target Start/End: Original strand, 9343646 - 9343715
Alignment:
Q  113 ttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    ||||||||||||||| ||||| ||||||||||||  ||||||||||||| || ||||||||| |||||||    
T  9343646 ttataacctatactatcattcccacctataaatatccctccatacttccctatttcctcacaccatatca 9343715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 244 - 344
Target Start/End: Original strand, 39650637 - 39650737
Alignment:
Q  244 caatattctctttggag-caaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaatc 342  Q
    ||||||||||||||| | ||||| ||| ||  |||||| ||||||||||||||||| |||||||||| | ||||||| |||  |||||||||||||||||    
T  39650637 caatattctctttgggggcaaaagtgaccattcttcttaggggtaaaatagtgagtggccgacttgg-ggagtgatcgaccattgggataagtttaaatc 39650735  T
Q  343 tg 344  Q
    ||    
T  39650736 tg 39650737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 248 - 339
Target Start/End: Original strand, 50065903 - 50065995
Alignment:
Q  248 attctctttggag-caaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaa 339  Q
    ||||||||||| | ||||| || |||| |||| | |||||||||||||||| ||||||| ||| ||||||||| |||| ||||||||||||||    
T  50065903 attctctttgggggcaaaagtggtcaatcttcgttggggtaaaatagtgagaagccgacatggggaagtgatcgacccttgggataagtttaa 50065995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 11012294 - 11012376
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    ||||| || ||| |||||||||| |||||||||| ||||||||||||| | | ||||||||| || ||||||||| |||||||    
T  11012294 acatttatggtggttataacctacactaccattcccacctataaataccctttcatacttccctatttcctcacaccatatca 11012376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 100 - 174
Target Start/End: Original strand, 46923935 - 46924009
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcaca 174  Q
    |||||||| || |||| ||||||||||| ||||| ||||||||||||   |||||||||||| ||||||||||||    
T  46923935 acattaatggtatttacaacctatactatcattcccacctataaatatctctccatacttccctaattcctcaca 46924009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 244 - 333
Target Start/End: Original strand, 47485841 - 47485931
Alignment:
Q  244 caatattctctttggag-caaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataa 333  Q
    ||||||||||||||| | ||||| || |||| |||| ||||| |||||||||||| ||||||| ||| ||||||||| |||| ||||||||    
T  47485841 caatattctctttgggggcaaaagtgctcaatcttcgtcgggataaaatagtgagaagccgacatggggaagtgatcgacccttgggataa 47485931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 100 - 174
Target Start/End: Original strand, 48566914 - 48566988
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcaca 174  Q
    ||||| || ||| |||||||||| |||||||||| ||||||||||||| |||||||| |||| || |||||||||    
T  48566914 acatttatggtggttataacctacactaccattcccacctataaatacccctccatatttccctatttcctcaca 48566988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 100 - 174
Target Start/End: Original strand, 49597348 - 49597422
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcaca 174  Q
    ||||| || ||| |||||||||| || ||||||| ||||||||||||| ||||||||||||| || |||||||||    
T  49597348 acatttatggtggttataacctacaccaccattcccacctataaatacccctccatacttccctatttcctcaca 49597422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 337
Target Start/End: Original strand, 46924070 - 46924162
Alignment:
Q  246 atattctctttggag-caaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagttt 337  Q
    ||||||||||||| | ||||| || |||| |||| |||||||||||||||||||| | ||| |||  |||||||||| || | ||||||||||    
T  46924070 atattctctttgggggcaaaagtggtcaatcttcgtcggggtaaaatagtgagtaactgacatgggaaagtgatcaatcctttggataagttt 46924162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 174
Target Start/End: Complemental strand, 26013597 - 26013535
Alignment:
Q  113 ttataacctatactaccattctcacctat-aaatactcctccatacttccttaattcctcaca 174  Q
    ||||||| ||||||| ||||||||||||| ||||||  |||||||||||| || |||||||||    
T  26013597 ttataacttatactatcattctcacctataaaatacctctccatacttccctatttcctcaca 26013535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 174
Target Start/End: Original strand, 46178809 - 46178870
Alignment:
Q  113 ttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcaca 174  Q
    |||||||||| |||||||||  ||||||||||||  ||||||||||||| || ||| |||||    
T  46178809 ttataacctacactaccatttccacctataaatatccctccatacttccctatttcttcaca 46178870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 7e-31; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 260 - 344
Target Start/End: Original strand, 31823261 - 31823345
Alignment:
Q  260 gcaaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaatctg 344  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  31823261 gcaaaagtgatcaaacttcttcggggtaaaatagtgagtagccgacttggggaagtgatcaacccttgggataagtttaaatctg 31823345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 32935843 - 32935925
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  32935843 acattaatggtgtttataacctatactaccattcccacctataaatacccctccatacttccctaattcctcacatcatatca 32935925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 244 - 341
Target Start/End: Original strand, 32935986 - 32936084
Alignment:
Q  244 caatattctctttgg-agcaaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaat 341  Q
    ||||||||||||||| || |||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||    
T  32935986 caatattctctttgggagaaaaagtgatcaaacttcttcggggtaaaatagtgagtagccgacttggggaagtgatcaacccttggaataagtttaaat 32936084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 244 - 344
Target Start/End: Complemental strand, 36174204 - 36174103
Alignment:
Q  244 caatattctctttggagcaaaaa-tgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaatc 342  Q
    ||||||||||||||| | ||||| ||||||| |||| |||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||    
T  36174204 caatattctctttgggggaaaaagtgatcaatcttcgtcggggtaaaatagtgagtagccgacttggggaagtgatcgacccttgggataagtttaaatc 36174105  T
Q  343 tg 344  Q
    ||    
T  36174104 tg 36174103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 244 - 344
Target Start/End: Original strand, 38131729 - 38131830
Alignment:
Q  244 caatattctctttggag-caaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaatc 342  Q
    ||||||||||||||| | ||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| | | |||||||||||||||    
T  38131729 caatattctctttgggggcaaaagtgatcaaacttcttcggggtaaaatagtgagtagccgacttggggaagtgatcaactcttaggataagtttaaatc 38131828  T
Q  343 tg 344  Q
    ||    
T  38131829 tg 38131830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 244 - 341
Target Start/End: Original strand, 14329275 - 14329373
Alignment:
Q  244 caatattctctttg-gagcaaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaat 341  Q
    |||||||||||||| | |||||| ||||||| ||||||||||||||||||||||||| ||||||||| ||||||||| |||| ||||||||||||||||    
T  14329275 caatattctctttgagggcaaaagtgatcaatcttcttcggggtaaaatagtgagtaaccgacttggggaagtgatcgacccttgggataagtttaaat 14329373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 244 - 344
Target Start/End: Complemental strand, 886824 - 886723
Alignment:
Q  244 caatattctctttggag-caaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaatc 342  Q
    ||||||||||||||  | ||||| ||||||| ||||||||||||||||||||||||| ||||||||| ||| |||||||||| |||||||||||||||||    
T  886824 caatattctctttgaggtcaaaagtgatcaaacttcttcggggtaaaatagtgagtacccgacttggggaactgatcaacccttgggataagtttaaatc 886725  T
Q  343 tg 344  Q
    ||    
T  886724 tg 886723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 244 - 344
Target Start/End: Complemental strand, 21712959 - 21712858
Alignment:
Q  244 caatattctcttt-ggagcaaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaatc 342  Q
    ||||||||||||| || |||||| ||||||| |||| |||||||||||||||||||||||||| ||| |||||||||||||| || ||||||||||||||    
T  21712959 caatattctctttaggggcaaaagtgatcaatcttcgtcggggtaaaatagtgagtagccgacatggggaagtgatcaacccttgagataagtttaaatc 21712860  T
Q  343 tg 344  Q
    ||    
T  21712859 tg 21712858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 100 - 182
Target Start/End: Complemental strand, 47043749 - 47043667
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    |||||||| ||||||| ||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||| |||||||    
T  47043749 acattaatggtgtttacaacctatactaccattcccacctataaatacccctccatacttccctaattcctcacaccatatca 47043667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 244 - 341
Target Start/End: Original strand, 53266219 - 53266317
Alignment:
Q  244 caatattctcttt-ggagcaaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaat 341  Q
    ||||||||||||| || |||||| ||||||| |||| |||||||||||||||||| ||| ||||||| ||||||||| |||||||||||||||||||||    
T  53266219 caatattctctttaggggcaaaagtgatcaatcttcgtcggggtaaaatagtgaggagctgacttggggaagtgatcgacccatgggataagtttaaat 53266317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 100 - 182
Target Start/End: Complemental strand, 886959 - 886877
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    |||||||| ||||||| || |||||||||||||| ||||||||||||| ||||||||||||| |||||||||||| |||||||    
T  886959 acattaatggtgtttacaaactatactaccattcccacctataaatacccctccatacttccctaattcctcacaccatatca 886877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 244 - 341
Target Start/End: Complemental strand, 1227739 - 1227641
Alignment:
Q  244 caatattctctttggag-caaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaat 341  Q
    ||||||| ||||||| | ||||| ||||||| ||||||||||||||||||||||||||||| ||||| ||||||||| |||| ||| ||||||||||||    
T  1227739 caatattatctttgggggcaaaagtgatcaatcttcttcggggtaaaatagtgagtagccggcttggggaagtgatcgacccttggaataagtttaaat 1227641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 100 - 182
Target Start/End: Complemental strand, 36174339 - 36174257
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    |||||||| ||||||| ||||||||||||||||| ||||||||||||| ||||||||||||| ||||| |||||| |||||||    
T  36174339 acattaatggtgtttacaacctatactaccattcccacctataaatacccctccatacttccataatttctcacaccatatca 36174257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 46814169 - 46814251
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    |||||||| ||||||| ||||||||||||||||| ||||||||||||| ||||||||||||  |||||||||||| |||||||    
T  46814169 acattaatggtgtttacaacctatactaccattcccacctataaatacccctccatacttctctaattcctcacaccatatca 46814251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 247 - 344
Target Start/End: Complemental strand, 27760932 - 27760834
Alignment:
Q  247 tattctctttggag-caaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaatctg 344  Q
    |||||||||||| | ||||| ||||||| |||||||||| |||||||||||||||| ||||| | ||||||||| |||  |||||||||||||||||||    
T  27760932 tattctctttgggggcaaaagtgatcaaacttcttcgggataaaatagtgagtagctgacttagggaagtgatcgaccattgggataagtttaaatctg 27760834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 113 - 182
Target Start/End: Complemental strand, 31936240 - 31936171
Alignment:
Q  113 ttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||| || ||||||||| |||||||    
T  31936240 ttataacctatattaccattctcacctataaatacccctccatacttccctatttcctcacagcatatca 31936171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 102 - 182
Target Start/End: Original strand, 33161950 - 33162030
Alignment:
Q  102 attaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    |||||| ||||||| ||||||||||||| ||||||||||||||||| ||||||||||||  ||||| |||||| |||||||    
T  33161950 attaatggtgtttacaacctatactacctttctcacctataaatacccctccatacttctctaatttctcacaccatatca 33162030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 244 - 338
Target Start/End: Original strand, 28797075 - 28797170
Alignment:
Q  244 caatattctctttggag-caaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagttta 338  Q
    ||||||||||||||| | ||||  ||||||| |||| |||||||||||||||||| ||||||| ||| |||||||||||||  |||||||||||||    
T  28797075 caatattctctttgggggcaaaggtgatcaatcttcgtcggggtaaaatagtgagaagccgacatggggaagtgatcaaccattgggataagttta 28797170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 244 - 341
Target Start/End: Original strand, 46814305 - 46814403
Alignment:
Q  244 caatattctctttgga-gcaaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaat 341  Q
    |||||||||||||||| |||||  ||||||| ||||||||| ||||||||||||| |||||||  || ||||||||| |||| | ||||||||||||||    
T  46814305 caatattctctttggaagcaaaggtgatcaaacttcttcggagtaaaatagtgagaagccgacaaggggaagtgatcgacccttaggataagtttaaat 46814403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 100 - 174
Target Start/End: Original strand, 53266089 - 53266163
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcaca 174  Q
    |||||||| ||||||| ||||||||||||||||| ||||||||||||| ||| ||||||||| ||||| ||||||    
T  53266089 acattaatggtgtttacaacctatactaccattcccacctataaataccccttcatacttccctaatttctcaca 53266163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 28796938 - 28797022
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctcc--atacttccttaattcctcacatcatatca 182  Q
    |||||||| ||||||| ||||||||||||||||  ||||||||||||| |||||  |||||||| |||||||||||| |||||||    
T  28796938 acattaatggtgtttacaacctatactaccatttccacctataaatacccctccatatacttccctaattcctcacaccatatca 28797022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 182
Target Start/End: Complemental strand, 1227867 - 1227785
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    |||||||| ||||||| ||||||||||| ||||  ||||||||||||| ||| ||||||||  |||||||||||| |||||||    
T  1227867 acattaatggtgtttacaacctatactatcatttccacctataaataccccttcatacttctctaattcctcacaccatatca 1227785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 174
Target Start/End: Original strand, 14329142 - 14329216
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcaca 174  Q
    |||||||| ||||||| |||  |||||||||||| ||||||||||||| |||| |||||||| ||||||||||||    
T  14329142 acattaatggtgtttacaactcatactaccattcccacctataaatacccctctatacttccataattcctcaca 14329216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 267 - 341
Target Start/End: Original strand, 33162107 - 33162181
Alignment:
Q  267 tgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaat 341  Q
    ||||||| ||||||||| ||||||||||||| ||||||  ||| ||||||||| |||| ||||||||||||||||    
T  33162107 tgatcaaacttcttcggcgtaaaatagtgagaagccgatatggggaagtgatcgacccttgggataagtttaaat 33162181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 49065464 - 49065402
Alignment:
Q  112 tttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcaca 174  Q
    |||| ||||||||||||||||| ||||||||||||| | ||||||||||| ||||||||||||    
T  49065464 tttacaacctatactaccattcccacctataaatacccttccatacttccctaattcctcaca 49065402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 113 - 182
Target Start/End: Original strand, 2778125 - 2778194
Alignment:
Q  113 ttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    ||||||||||||||||||||| |||||| |||||| ||| ||||||||| || ||||||||| |||||||    
T  2778125 ttataacctatactaccattcccacctacaaataccccttcatacttccctatttcctcacaccatatca 2778194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 285 - 344
Target Start/End: Complemental strand, 49065298 - 49065239
Alignment:
Q  285 gtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaatctg 344  Q
    ||||||||||||||||||||| ||| |||||||| ||||| || ||||||||||||||||    
T  49065298 gtaaaatagtgagtagccgacatggggaagtgataaacccttgagataagtttaaatctg 49065239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 100 - 172
Target Start/End: Complemental strand, 21713095 - 21713023
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctca 172  Q
    |||||||| || |||| |||||||||||| |||| |||||||| |||| ||| ||||||||| ||||||||||    
T  21713095 acattaatggtatttacaacctatactacaattcccacctatatataccccttcatacttccctaattcctca 21713023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 42039173 - 42039255
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    ||||| || ||| |||||||||| ||||||| || ||||||||||||| | ||||||||||  || ||||||||| |||||||    
T  42039173 acatttatggtggttataacctacactaccagtcccacctataaatacccatccatacttctctatttcctcacaccatatca 42039255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 46567418 - 46567500
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    ||||| || ||| |||||||||| |||||||||  ||| ||||||||| ||||||||||||  || ||||||||| |||||||    
T  46567418 acatttatggtggttataacctacactaccatttccacttataaatacccctccatacttcaatatttcctcacaccatatca 46567500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 341
Target Start/End: Complemental strand, 47043614 - 47043517
Alignment:
Q  244 caatattctctttggag-caaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaat 341  Q
    |||||||| |||||| | ||||| ||||||| |||| ||||| |||||||||||  ||||||| |||  |||||||| |||| ||||||||||||||||    
T  47043614 caatattcactttgggggcaaaagtgatcaatcttcgtcggg-taaaatagtgaaaagccgacatgggaaagtgatcgacccttgggataagtttaaat 47043517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 174
Target Start/End: Complemental strand, 13867722 - 13867661
Alignment:
Q  113 ttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcaca 174  Q
    |||||||||||  |||||||| |||||||||||||||||||| ||||||  | |||||||||    
T  13867722 ttataacctatgttaccattcccacctataaatactcctccaaacttccccatttcctcaca 13867661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 161
Target Start/End: Complemental strand, 14990223 - 14990178
Alignment:
Q  116 taacctatactaccattctcacctataaatactcctccatacttcc 161  Q
    |||||||||||||||||||||| ||||||||| |||||| ||||||    
T  14990223 taacctatactaccattctcacttataaatacccctccaaacttcc 14990178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 159
Target Start/End: Original strand, 31823166 - 31823225
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatactt 159  Q
    ||||| || ||| |||||||||| |||| ||||| ||||||||||||| |||||||||||    
T  31823166 acatttatggtggttataacctacactatcattcccacctataaatacccctccatactt 31823225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 159
Target Start/End: Original strand, 38131595 - 38131654
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatactt 159  Q
    ||||| || ||| |||||||||| |||| ||||  |||||||||||||||||||||||||    
T  38131595 acatttatggtggttataacctacactatcatttccacctataaatactcctccatactt 38131654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 182
Target Start/End: Complemental strand, 16524997 - 16524928
Alignment:
Q  113 ttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    ||||||| ||||||||||||  ||||||||||||| | | ||||||||  || ||||||||| |||||||    
T  16524997 ttataacatatactaccatttccacctataaataccctttcatacttctctatttcctcacaccatatca 16524928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 178
Target Start/End: Complemental strand, 18414092 - 18414027
Alignment:
Q  113 ttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcat 178  Q
    |||||||||||  || ||||| |||||||| ||||||||||| ||||||| | || ||||||||||    
T  18414092 ttataacctatgttatcattcccacctatatatactcctccaaacttcctcattttctcacatcat 18414027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 63
Target Start/End: Original strand, 32935778 - 32935806
Alignment:
Q  35 tttggtcagtttttcaacattcaatctac 63  Q
    |||||||||||||||||||||||||||||    
T  32935778 tttggtcagtttttcaacattcaatctac 32935806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 244 - 344
Target Start/End: Complemental strand, 22706396 - 22706295
Alignment:
Q  244 caatattctctttggag-caaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaatc 342  Q
    ||||||||||||||||| ||||| ||||||| |||| ||| |||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||    
T  22706396 caatattctctttggaggcaaaagtgatcaatcttcgtcgaggtaaaatagtgagtagccgacatggggaagtgatcaacccttgggataagtttaaatc 22706297  T
Q  343 tg 344  Q
    ||    
T  22706296 tg 22706295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 244 - 344
Target Start/End: Complemental strand, 7083762 - 7083662
Alignment:
Q  244 caatattctctttggagcaaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaatct 343  Q
    ||||||||||||||  |||||| ||||||| |||| |||||||||||||||||||||||||| ||| |||||||||||||| || |||||||||||||||    
T  7083762 caatattctctttgaggcaaaagtgatcaatcttcgtcggggtaaaatagtgagtagccgacatggggaagtgatcaacccttgagataagtttaaatct 7083663  T
Q  344 g 344  Q
    |    
T  7083662 g 7083662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 100 - 182
Target Start/End: Complemental strand, 3461343 - 3461261
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    |||||||| ||||||| ||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||| |||||||    
T  3461343 acattaatggtgtttacaacctatactaccattcccacctataaatacccctccatacttccctaattcctcacaccatatca 3461261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 100 - 182
Target Start/End: Complemental strand, 40017113 - 40017031
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    |||||||| ||||||| ||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||| |||||||    
T  40017113 acattaatggtgtttacaacctatactaccattcccacctataaatacccctccatacttccctaattcctcacaccatatca 40017031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 1974473 - 1974555
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    |||||||| ||||||| ||||||||||||||||| ||||||||||||| ||||||||||||| ||||| |||||| |||||||    
T  1974473 acattaatggtgtttacaacctatactaccattcccacctataaatacccctccatacttccctaatttctcacaccatatca 1974555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 244 - 341
Target Start/End: Original strand, 6271060 - 6271158
Alignment:
Q  244 caatattctctttggagcaaaaa-tgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaat 341  Q
    |||||| |||||||| | ||||| ||||||| |||| |||||||||||||||||| ||||||| ||||||||||||| |||| ||||||||||||||||    
T  6271060 caatatactctttggggaaaaaagtgatcaatcttcgtcggggtaaaatagtgagaagccgacatggagaagtgatcgacccttgggataagtttaaat 6271158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 10532929 - 10533011
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    |||||||| || ||||||||||||||||||||| |||||||||||||| ||||||||||||| || ||||||||| |||||||    
T  10532929 acattaatggtatttataacctatactaccattttcacctataaatacccctccatacttccctatttcctcacaccatatca 10533011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 261 - 344
Target Start/End: Original strand, 39223215 - 39223298
Alignment:
Q  261 caaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaatctg 344  Q
    ||||| ||||||| |||||||||| |||||||||||||| ||||| ||| ||||||||||||||  ||||||||||||||||||    
T  39223215 caaaagtgatcaaacttcttcgggataaaatagtgagtaaccgacctggggaagtgatcaaccctagggataagtttaaatctg 39223298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 262 - 344
Target Start/End: Complemental strand, 1172718 - 1172636
Alignment:
Q  262 aaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaatctg 344  Q
    |||| ||||||| ||||||| ||||||||||||||||||||||||||| ||| ||||| |||| || ||||||||||||||||    
T  1172718 aaaagtgatcaatcttcttcagggtaaaatagtgagtagccgacttggggaaatgatcgacccttgagataagtttaaatctg 1172636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 244 - 341
Target Start/End: Complemental strand, 3461208 - 3461110
Alignment:
Q  244 caatattctctttggag-caaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaat 341  Q
    ||||||||||||||| | ||||||||||||| |||||| |||||||||||||||||||||||||||| | ||||||| ||||    |||||||||||||    
T  3461208 caatattctctttgggggcaaaaatgatcaatcttcttaggggtaaaatagtgagtagccgacttggggtagtgatcgaccctcatgataagtttaaat 3461110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 244 - 344
Target Start/End: Original strand, 6427575 - 6427675
Alignment:
Q  244 caatattctctttggag-caaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaatc 342  Q
    ||||||||||||||| | ||||||||||  | |||| |||||||||||||||||||| ||||| ||| |||||||||||||| || ||||||||||||||    
T  6427575 caatattctctttgggggcaaaaatgatttatcttcgtcggggtaaaatagtgagtaaccgacatgg-gaagtgatcaacccttgagataagtttaaatc 6427673  T
Q  343 tg 344  Q
    ||    
T  6427674 tg 6427675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 275 - 344
Target Start/End: Complemental strand, 41758524 - 41758455
Alignment:
Q  275 cttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaatctg 344  Q
    ||||||||| |||||||||||||||||| |||||| |||||||||||||  |||||||||||||||||||    
T  41758524 cttcttcggagtaaaatagtgagtagccaacttggggaagtgatcaaccattgggataagtttaaatctg 41758455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 247 - 341
Target Start/End: Original strand, 1974612 - 1974707
Alignment:
Q  247 tattctctttg-gagcaaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaat 341  Q
    ||||||||||| | |||||| ||||||| |||| |||||||||||||||||| ||||||| ||| ||||||||| |||  ||||||||||||||||    
T  1974612 tattctctttgagggcaaaagtgatcaatcttcgtcggggtaaaatagtgagaagccgacatggggaagtgatcgaccattgggataagtttaaat 1974707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 100 - 182
Target Start/End: Complemental strand, 4846774 - 4846692
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    |||||||| |||||||  |||||||||| ||||| ||||||||||||||||| ||||||||| ||||| |||||| |||||||    
T  4846774 acattaatggtgtttacgacctatactatcattcccacctataaatactccttcatacttccctaattactcacaccatatca 4846692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 6270925 - 6271007
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    ||||||||  |||||| ||||||||||  ||||| ||||||||||||| ||||||||||||| |||||||||||| |||||||    
T  6270925 acattaatgatgtttacaacctatactgtcattcccacctataaatacccctccatacttccctaattcctcacaccatatca 6271007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 100 - 174
Target Start/End: Original strand, 6427439 - 6427513
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcaca 174  Q
    |||||||| || |||| ||| ||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||    
T  6427439 acattaatggtatttacaacttatactaccattcccacctataaatacccctccatacttccctaattcctcaca 6427513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 25898794 - 25898876
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    ||||| || ||| ||||||||||||||||||||| ||||||||||||| ||||||||||||| || || |||||| |||||||    
T  25898794 acatttatggtggttataacctatactaccattcccacctataaatacccctccatacttccctattttctcacaccatatca 25898876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 100 - 174
Target Start/End: Complemental strand, 41758642 - 41758568
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcaca 174  Q
    ||||| || ||| |||||||||| |||||||||||||||||||||||| ||||||||||||| || |||||||||    
T  41758642 acatttatggtggttataacctacactaccattctcacctataaatacccctccatacttccctatttcctcaca 41758568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 117 - 182
Target Start/End: Original strand, 39223078 - 39223143
Alignment:
Q  117 aacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    ||||||||||||||||  ||||||||||||| ||||||||||||| |||||||||||| |||||||    
T  39223078 aacctatactaccatttccacctataaatacccctccatacttccgtaattcctcacaccatatca 39223143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 244 - 339
Target Start/End: Complemental strand, 4846565 - 4846469
Alignment:
Q  244 caatattctctttggag-caaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaa 339  Q
    ||||||||||||||| | ||||| ||||||| |||| |||||||||||||||||| ||||||| ||| ||| ||||| | || ||||||||||||||    
T  4846565 caatattctctttgggggcaaaagtgatcaatcttcgtcggggtaaaatagtgagaagccgacatggggaactgatcgatccttgggataagtttaa 4846469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 174
Target Start/End: Complemental strand, 1172865 - 1172791
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcaca 174  Q
    |||||||| ||||||| ||||||||||||||||| ||||||||||||  ||||||||||| | | ||||||||||    
T  1172865 acattaatggtgtttacaacctatactaccattcccacctataaatatccctccatacttaccttattcctcaca 1172791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 244 - 341
Target Start/End: Complemental strand, 40016978 - 40016880
Alignment:
Q  244 caatattctctttggag-caaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaat 341  Q
    ||||||||||||||| | ||||  |||||||  ||| |||||||||||||||||| ||||||| ||  ||||||||| |||| ||||||||||||||||    
T  40016978 caatattctctttgggggcaaaggtgatcaatattcgtcggggtaaaatagtgagaagccgacatgaggaagtgatcgacccttgggataagtttaaat 40016880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 260 - 341
Target Start/End: Original strand, 10533119 - 10533199
Alignment:
Q  260 gcaaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaat 341  Q
    |||||| ||||||  ||||||||||| ||| |||||||||||||| |||| |||||||||||||| | ||||||||||||||    
T  10533119 gcaaaagtgatcatacttcttcggggcaaa-tagtgagtagccgatttggggaagtgatcaacccctaggataagtttaaat 10533199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 113 - 182
Target Start/End: Original strand, 16101046 - 16101115
Alignment:
Q  113 ttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    ||||||||||||||  ||||||||||||||||||| ||||||||||||  || ||||||||| |||||||    
T  16101046 ttataacctatactgtcattctcacctataaatacccctccatacttctctatttcctcacaccatatca 16101115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 7083886 - 7083824
Alignment:
Q  112 tttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcaca 174  Q
    |||| ||||||||||||||||| ||||||||||||  ||||||||||||| ||| ||||||||    
T  7083886 tttacaacctatactaccattcccacctataaatatccctccatacttccctaactcctcaca 7083824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 182
Target Start/End: Complemental strand, 28784675 - 28784606
Alignment:
Q  113 ttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    ||||||| |||| ||| |||| ||||||||||||| ||||||||||||  || ||||||||| |||||||    
T  28784675 ttataacttatattactattcccacctataaatacccctccatacttctctatttcctcacaccatatca 28784606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 174
Target Start/End: Complemental strand, 22706534 - 22706460
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcaca 174  Q
    |||||||| || |||| |||||||| ||||||||  |||  ||||||| ||||||||||||  ||||||||||||    
T  22706534 acattaatggtatttacaacctatattaccattcctacccttaaatacccctccatacttctctaattcctcaca 22706460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 19044041 - 19044105
Alignment:
Q  97 acaacattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttcc 161  Q
    |||||||| || || ||||||||||||  || ||||| ||||||||||||| |||||| ||||||    
T  19044041 acaacatttattgtatttataacctatgttatcattcccacctataaatacccctccaaacttcc 19044105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 20202582 - 20202530
Alignment:
Q  130 attctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    |||| ||||||||||||| ||||||||||||| || || |||||| |||||||    
T  20202582 attcccacctataaatacccctccatacttccctattttctcacaccatatca 20202530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 244 - 344
Target Start/End: Complemental strand, 34471386 - 34471285
Alignment:
Q  244 caatattctctttggagcaaaaa-tgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaatc 342  Q
    ||||||||||||||| | ||||| |  |||| ||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||    
T  34471386 caatattctctttgggggaaaaagttgtcaaacttcttcggggtaaaatagcgagtagccgacttggggaagtgatcaacccttgggataagtttaaatc 34471287  T
Q  343 tg 344  Q
    ||    
T  34471286 tg 34471285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 244 - 344
Target Start/End: Original strand, 43635561 - 43635662
Alignment:
Q  244 caatattctcttt-ggagcaaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaatc 342  Q
    ||||||||||||| || |||||| ||||||| |||||| |||||||||||||||||||||||||||| ||||||||| |||| ||| |||||||||||||    
T  43635561 caatattctctttaggggcaaaagtgatcaatcttcttaggggtaaaatagtgagtagccgacttggggaagtgatcgacccttggcataagtttaaatc 43635660  T
Q  343 tg 344  Q
    ||    
T  43635661 tg 43635662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 102 - 182
Target Start/End: Original strand, 28704162 - 28704242
Alignment:
Q  102 attaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||| |||||||    
T  28704162 attaatggtgtttataacctatactaccattcccacctataaatacccctccatacttccctaattcctcacaccatatca 28704242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 43635426 - 43635508
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    |||||||| ||||||| ||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||| |||||||    
T  43635426 acattaatggtgtttacaacctatactaccattcccacctataaatacccctccatacttccctaattcctcacaccatatca 43635508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 260 - 341
Target Start/End: Original strand, 4640115 - 4640196
Alignment:
Q  260 gcaaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaat 341  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||| | ||||| |||||||| ||||||||||||||||    
T  4640115 gcaaaagtgatcaatcttcttcggggtaaaatagtgagtagccgacttagggaagtaatcaacccttgggataagtttaaat 4640196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 244 - 344
Target Start/End: Complemental strand, 23542536 - 23542435
Alignment:
Q  244 caatattctcttt-ggagcaaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaatc 342  Q
    ||||||||||||| || |||||| ||||||| ||||||||||||||||||| ||||| ||||||||  |||||||||||||| || |||| |||||||||    
T  23542536 caatattctctttcggggcaaaagtgatcaaacttcttcggggtaaaatagcgagtaaccgacttgaggaagtgatcaacccttgtgatatgtttaaatc 23542437  T
Q  343 tg 344  Q
    ||    
T  23542436 tg 23542435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 4639925 - 4640007
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    ||||| || ||||||| |||||||| ||||| || ||||||||||||| ||||||||||||| |||||||||||| |||||||    
T  4639925 acattgatggtgtttacaacctatattaccaatcccacctataaatacccctccatacttccctaattcctcacaccatatca 4640007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 112 - 182
Target Start/End: Complemental strand, 23542660 - 23542590
Alignment:
Q  112 tttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    |||| ||| ||||||| ||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  23542660 tttacaacttatactatcattcccacctataaatacccctccatacttccctaattcctcacatcatatca 23542590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 178
Target Start/End: Complemental strand, 34471522 - 34471444
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcat 178  Q
    ||||| || ||| |||||||||| |||||||||| ||||||||||||| ||||||||||| | || |||||||||||||    
T  34471522 acatttatggtggttataacctacactaccattcccacctataaatacccctccatactttcctatttcctcacatcat 34471444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 182
Target Start/End: Original strand, 10829656 - 10829726
Alignment:
Q  112 tttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    |||||||||||||||||||||| |||||||||||   |||| |||| ||| || ||||||||| |||||||    
T  10829656 tttataacctatactaccattcccacctataaatttccctctatacctccctatttcctcacaccatatca 10829726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 28704314 - 28704386
Alignment:
Q  269 atcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaat 341  Q
    ||||| |||| |||| ||||||||||||| ||||||| ||| ||| ||||| |||| ||| ||||||||||||    
T  28704314 atcaatcttcgtcggagtaaaatagtgagaagccgacatggggaaatgatcgacccttggaataagtttaaat 28704386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 244 - 343
Target Start/End: Original strand, 319517 - 319617
Alignment:
Q  244 caatattctctttggag-caaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaatc 342  Q
    ||||||||||||||| | ||||| ||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||  |||||||| ||||||||    
T  319517 caatattctctttgggggcaaaagtgatcaaacttcttcgaggtaaaatagtgagtagccgacttggggaagtgatcaacctttgggataaatttaaatc 319616  T
Q  343 t 343  Q
    |    
T  319617 t 319617  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 244 - 341
Target Start/End: Original strand, 14830868 - 14830966
Alignment:
Q  244 caatattctctttgg-agcaaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaat 341  Q
    ||||||||||||||| ||||||| ||||||| |||| |||||||||||||||||| ||||||| ||| ||||||||| |||| ||||||||||||||||    
T  14830868 caatattctctttgggagcaaaagtgatcaatcttcgtcggggtaaaatagtgagaagccgacatggggaagtgatcgacccttgggataagtttaaat 14830966  T

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Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 14153671 - 14153753
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    |||||||| ||||||| |||||||||||||| || ||||||||||||| ||||||||||||| |||||||||||| |||||||    
T  14153671 acattaatggtgtttacaacctatactaccactcccacctataaatacccctccatacttccctaattcctcacaccatatca 14153753  T

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Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 102 - 182
Target Start/End: Original strand, 35053626 - 35053706
Alignment:
Q  102 attaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    |||||| ||||||| ||||||||||||||||| ||||||||||||| ||||||||||||| ||||| |||||| |||||||    
T  35053626 attaatggtgtttacaacctatactaccattcccacctataaatacccctccatacttccctaattgctcacaccatatca 35053706  T

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Target: chr6; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 100 - 182
Target Start/End: Complemental strand, 11718579 - 11718497
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    |||||||| || |||||||| ||||||||||||||||||||||||||| ||| |||||||||||| || |||||| |||||||    
T  11718579 acattaatggtatttataacttatactaccattctcacctataaataccccttcatacttccttattttctcacaccatatca 11718497  T

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Target: chr6; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 14830709 - 14830791
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    |||||||| ||||||| || ||||| || ||||| ||||||||||||| |||||||||||||||||||||||||| |||||||    
T  14830709 acattaatggtgtttacaatctataatatcattcccacctataaatacccctccatacttccttaattcctcacaccatatca 14830791  T

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Target: chr6; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 16444584 - 16444666
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    |||||||| ||||||| ||||||||||||||||| ||||||||||||| ||| ||||||||| ||||| |||||| |||||||    
T  16444584 acattaatggtgtttacaacctatactaccattcccacctataaataccccttcatacttccctaattgctcacaccatatca 16444666  T

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Target: chr6; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 244 - 341
Target Start/End: Original strand, 16444718 - 16444814
Alignment:
Q  244 caatattctctttggag-caaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaat 341  Q
    ||||||||||||||| | ||||  ||||||| |||||||||  ||||||||||||||||||||  || ||||||||| |||| ||||||||||||||||    
T  16444718 caatattctctttggggacaaaggtgatcaaacttcttcgg--taaaatagtgagtagccgacacggggaagtgatcgacccttgggataagtttaaat 16444814  T

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Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 261 - 341
Target Start/End: Original strand, 24173869 - 24173949
Alignment:
Q  261 caaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaat 341  Q
    ||||| ||||||| |||||| |||||||||||||||||||||||||||   ||||||| ||||  ||||||||| ||||||    
T  24173869 caaaagtgatcaaacttcttaggggtaaaatagtgagtagccgacttgagaaagtgatgaaccattgggataagattaaat 24173949  T

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Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 244 - 341
Target Start/End: Original strand, 14153810 - 14153908
Alignment:
Q  244 caatattctctttggagcaaaaa-tgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaat 341  Q
    ||||||||||||||| | ||||| ||||||  |||| ||||| ||||||| |||| ||||||| ||| ||||||||| |||| | ||||||||||||||    
T  14153810 caatattctctttgggggaaaaagtgatcattcttcatcgggataaaataatgagaagccgacatggggaagtgatcgacccttaggataagtttaaat 14153908  T

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Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 244 - 341
Target Start/End: Original strand, 35053759 - 35053857
Alignment:
Q  244 caatattctctttggag-caaaaatgatcaagcttcttcggggtaaaatagtgagtagccgacttggagaagtgatcaacccatgggataagtttaaat 341  Q
    ||||||||||||||| | ||||  ||||||| |||||| |||||||||||||||  ||||||| ||| ||||||||| |||| || | |||||||||||    
T  35053759 caatattctctttgggggcaaaggtgatcaaacttctttggggtaaaatagtgaaaagccgacatggggaagtgatcgacccttgagttaagtttaaat 35053857  T

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Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 182
Target Start/End: Original strand, 13312760 - 13312829
Alignment:
Q  113 ttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    |||||||||| |||||||||| ||| ||||||||||||||||||||| | || || |||||| |||||||    
T  13312760 ttataacctaaactaccattcccacttataaatactcctccatactttcctattttctcacaccatatca 13312829  T

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Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 182
Target Start/End: Original strand, 24173720 - 24173799
Alignment:
Q  103 ttaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    ||||| || |||| |||||||||||| |||| |||||| |||||| |||||||| |||| ||||||| |||| |||||||    
T  24173720 ttaatggtatttacaacctatactacaattcccacctacaaatacccctccatatttccctaattccacacaccatatca 24173799  T

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Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 170
Target Start/End: Original strand, 319381 - 319451
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcct 170  Q
    ||||| || ||| |||||||||| || ||||||| ||||||||||||| ||||| ||||||| || |||||    
T  319381 acatttatggtggttataacctacaccaccattcccacctataaatacacctccgtacttccctatttcct 319451  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 11718644 - 11718616
Alignment:
Q  35 tttggtcagtttttcaacattcaatctac 63  Q
    |||||||||||||||||||||||||||||    
T  11718644 tttggtcagtttttcaacattcaatctac 11718616  T

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Target: scaffold1455 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold1455
Description:

Target: scaffold1455; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 100 - 182
Target Start/End: Complemental strand, 134 - 52
Alignment:
Q  100 acattaatagtgtttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcacatcatatca 182  Q
    |||||||| |||||||  ||||||| |||||||| ||||||||||||| ||||||||||| | |||||||||||| |||||||    
T  134 acattaatggtgtttacgacctatattaccattcccacctataaatacccctccatacttacctaattcctcacaccatatca 52  T

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Target: scaffold0223 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 174
Target Start/End: Complemental strand, 15997 - 15936
Alignment:
Q  113 ttataacctatactaccattctcacctataaatactcctccatacttccttaattcctcaca 174  Q
    ||||||||||||||||||||| ||||||||||||| ||| || ||||||| | |||||||||    
T  15997 ttataacctatactaccattcccacctataaataccccttcaaacttcctcatttcctcaca 15936  T

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Target: scaffold0223; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 333
Target Start/End: Complemental strand, 15824 - 15779
Alignment:
Q  288 aaatagtgagtagccgacttggagaagtgatcaacccatgggataa 333  Q
    |||||||||||||| ||||||  |||||||||||||| ||||||||    
T  15824 aaatagtgagtagctgacttgaggaagtgatcaacccttgggataa 15779  T

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