View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5988_low_18 (Length: 234)
Name: NF5988_low_18
Description: NF5988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5988_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 40892303 - 40892522
Alignment:
| Q |
1 |
ctaaaaggagagaatatgaaaataaatttggcattacctatcagcaatgtattggagaagatcatccgtggcaaaacaataaatatcannnnnnnctaaa |
100 |
Q |
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| T |
40892303 |
ctaaaaggagagaatatgaaaataaatttggcattacctaccagcaatgtattggagaagatcatcggtggcaaaacaataaatatcatttttttctaaa |
40892402 |
T |
|
| Q |
101 |
tggccagaacttagatcaacagcgtattgacaaaggttaaccaaacaatcaagattatgagtcccatgatcatcagataagaaagaaaagttccaatgtt |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40892403 |
tggccagaacttagatcaacagcgtactgacaaaggttaaccaaacaatcaagattatgagtcccatgatcatcagataagaaagaaaagttcccatgtt |
40892502 |
T |
|
| Q |
201 |
aatctcgcaccacatgaaag |
220 |
Q |
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|||||||||||||||||||| |
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| T |
40892503 |
aatctcgcaccacatgaaag |
40892522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 146
Target Start/End: Original strand, 30623880 - 30624018
Alignment:
| Q |
8 |
gagagaatatgaaaataaatttggcattacctatcagcaatgtattggagaagatcatccgtggcaaaacaataaatatcannnnnnnctaaatggccag |
107 |
Q |
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||||||||| |||| |||| | || |||||||||||||||||||||||||||||||||| || |||| | ||| |||||| ||||||| |||| |
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| T |
30623880 |
gagagaataggaaagtaaaatgggtattacctatcagcaatgtattggagaagatcatcagtaccaaatccatagatatcaatcttttctaaatgaccag |
30623979 |
T |
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| Q |
108 |
aacttagatcaacagcgtattgacaaaggttaaccaaac |
146 |
Q |
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| T |
30623980 |
aacttaggtcaacagcatattgacaaagattgaccaaac |
30624018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 35 - 155
Target Start/End: Complemental strand, 38284720 - 38284600
Alignment:
| Q |
35 |
tacctatcagcaatgtattggagaagatcatccgtggcaaaacaataaatatcannnnnnnctaaatggccagaacttagatcaacagcgtattgacaaa |
134 |
Q |
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|||||||||||||||||||||||||||| ||| | |||| | |||||||||| ||||||| |||||||||||||||||||| |||||||||| |
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| T |
38284720 |
tacctatcagcaatgtattggagaagatgatcagaaccaaatctataaatatcaattttttctaaatgaccagaacttagatcaacagcatattgacaaa |
38284621 |
T |
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| Q |
135 |
ggttaaccaaacaatcaagat |
155 |
Q |
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| T |
38284620 |
gcttgaccaaataatcaagat |
38284600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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