View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5988_low_2 (Length: 605)
Name: NF5988_low_2
Description: NF5988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5988_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 14 - 587
Target Start/End: Complemental strand, 34681977 - 34681396
Alignment:
| Q |
14 |
agggactagaacggatgatgcaaatttgtgaaaatagttcctaacttcttgtgatagctgatgtatgtatgcaccgaatttgttgaaactcgagctccta |
113 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
34681977 |
agggactagaacggatgacacaaatttgtgaaaatagttcctaacttcttgtgatagctgatgtatgtatgcaccgaatttgttgaaactcgagctccca |
34681878 |
T |
|
| Q |
114 |
ctatagaaagtccctgcg--------atagacaccaaaacagaaccaacacggatgctccacagaaacagaagagcgcagatccaaaaacaaaacttgtc |
205 |
Q |
| |
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| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34681877 |
cgatagaaagtccctgcggccatcaaatagacaccaaaacagaaccaacacgaatgctccacagaaacagaagagcgcagatccaaaaacaaaacttgtc |
34681778 |
T |
|
| Q |
206 |
gatcttgatcgaataattcttcaagatagaactttatattcatctgctaccttttcccatttaatagcagcctgtttaaatacctttgcattcctagcat |
305 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34681777 |
gatcttgattgaataattcttcaagatagaactttatattcatctgctcccttttcccatttaatagcagcctgtttaaatacctttgcattcctagcat |
34681678 |
T |
|
| Q |
306 |
tccaaatggaagagataatggagaccaatatcactcccaacctctcacagacggttttacctcctgcaactagacctttgaacaaaatgagacgctcaaa |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34681677 |
tccaaatggaagagataatggagaccaatatcactcccaacctctcacaaacggttttacctcctgcaactagacctttgaacaaaatgagacgctcaaa |
34681578 |
T |
|
| Q |
406 |
tcctccttcaacaaaaacagccgaaacaccgagccatttcaacgactcactccaaatcgaccataaaacagcacaattgaaaaggatatggttcacagtc |
505 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
34681577 |
tcctccttcaacaaaaacagccaaaacaccgagccatttcaacgactcactccaaatcgaccataaaacagcacgattaaaaaggatatggttcacagtc |
34681478 |
T |
|
| Q |
506 |
tcaagcctaccgcaaccgccaacacagtataacgatgaattcaacctcacacctctaaggcttagattatccttagtgggta |
587 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
34681477 |
tcaagcctaccgcaaccgccaacacagtataaagatgaattcaacctcacacctctaaggcttagattatacttagtgggta |
34681396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 153; Significance: 9e-81; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 196 - 576
Target Start/End: Complemental strand, 10831464 - 10831084
Alignment:
| Q |
196 |
aaaacttgtcgatcttgatcgaataattcttcaagatagaactttatattcatctgctaccttttcccatttaatagcagcctgtttaaatacctttgca |
295 |
Q |
| |
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||||| ||| |||||| ||||||||| ||| ||||||||||||||||||||| | || ||||||||||| |||||| ||| ||||| ||| ||| |||| |
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|
| T |
10831464 |
aaaacctgtagatcttaatcgaataactctccaagatagaactttatattcacccgcaaccttttcccaattaataccagtctgttaaaagaccattgcg |
10831365 |
T |
|
| Q |
296 |
ttcctagcattccaaatggaagagataatggagaccaatatcactcccaacctctcacagacggttttacctcctgcaactagacctttgaacaaaatga |
395 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||| | || || |||| ||||||| ||| |||||||||| ||||| | ||||||||||||| | | |
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|
| T |
10831364 |
ttcctagcattccagatggaagagataattgagacctagattacacccagcctctcaagaacgtttttacctccagcaaccaaacctttgaacaaattta |
10831265 |
T |
|
| Q |
396 |
gacgctcaaatcctccttcaacaaaaacagccgaaacaccgagccatttcaacgactcactccaaatcgaccataaaacagcacaattgaaaaggatatg |
495 |
Q |
| |
|
|| |||||||||| ||||||||||||||| | |||||||||||| | ||||||||||| | ||||||| | | |||| ||||||||| |||| || | |
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| T |
10831264 |
gatgctcaaatcccccttcaacaaaaacacctgaaacaccgagctacttcaacgactcgcgccaaatcatcgacaaaatagcacaattaaaaaagacgcg |
10831165 |
T |
|
| Q |
496 |
gttcacagtctcaagcctaccgcaaccgccaacacagtataacgatgaattcaacctcacacctctaaggcttagattatc |
576 |
Q |
| |
|
|||||||||||| ||||||||||| || |||||| | || ||| |||||||||||||||||||||||| |||||||||||| |
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|
| T |
10831164 |
gttcacagtctcgagcctaccgcagccaccaacataatacaacaatgaattcaacctcacacctctaaagcttagattatc |
10831084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 429 - 576
Target Start/End: Complemental strand, 40754714 - 40754567
Alignment:
| Q |
429 |
aaacaccgagccatttcaacgactcactccaaatcgaccataaaacagcacaattgaaaaggatatggttcacagtctcaagcctaccgcaaccgccaac |
528 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||| |||| || |||||| |||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
40754714 |
aaactccgagccatttcaacgtctcactccaaatcgatgccaaaataggacaattaaaaaatatatggttcacagtctcaagcctaccgcaacctccaac |
40754615 |
T |
|
| Q |
529 |
acagtataacgatgaattcaacctcacacctctaaggcttagattatc |
576 |
Q |
| |
|
||| ||||||||| |||||| ||||||||||||| || | |||||||| |
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|
| T |
40754614 |
acaatataacgattaattcagcctcacacctctacggttaagattatc |
40754567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 196 - 304
Target Start/End: Complemental strand, 12201712 - 12201604
Alignment:
| Q |
196 |
aaaacttgtcgatcttgatcgaataattcttcaagatagaactttatattcatctgctaccttttcccatttaatagcagcctgtttaaatacctttgca |
295 |
Q |
| |
|
||||| |||| ||||| ||||||| ||||| |||||||||||||||||||||||||| ||| | ||||| | |||| |||||||| |||| ||| ||| |
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|
| T |
12201712 |
aaaacctgtcaatctttatcgaatgattctccaagatagaactttatattcatctgcaaccctctcccaatcaatatcagcctgtgtaaaaaccattgtg |
12201613 |
T |
|
| Q |
296 |
ttcctagca |
304 |
Q |
| |
|
||||||||| |
|
|
| T |
12201612 |
ttcctagca |
12201604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 196 - 324
Target Start/End: Complemental strand, 40754862 - 40754734
Alignment:
| Q |
196 |
aaaacttgtcgatcttgatcgaataattcttcaagatagaactttatattcatctgctaccttttcccatttaatagcagcctgtttaaatacctttgca |
295 |
Q |
| |
|
||||| ||||| ||||||| |||| ||||| ||||||| |||||||||||||||||| || | ||||| | |||| |||||| | |||| ||| |||| |
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|
| T |
40754862 |
aaaacctgtcggtcttgattgaatgattctccaagatataactttatattcatctgcatccctctcccaatcaatatcagcctttgtaaaaaccattgcg |
40754763 |
T |
|
| Q |
296 |
ttcctagcattccaaatggaagagataat |
324 |
Q |
| |
|
|||| ||||||||||||||| || ||||| |
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|
| T |
40754762 |
ttccaagcattccaaatggacgatataat |
40754734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 132 - 201
Target Start/End: Complemental strand, 10831628 - 10831560
Alignment:
| Q |
132 |
atagacaccaaaacagaaccaacacggatgctccacagaaacagaagagcgcagatccaaaaacaaaact |
201 |
Q |
| |
|
|||||| ||||||||||||||||| ||||| ||||||| || ||||||| |||| |||||||||||||| |
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|
| T |
10831628 |
atagactccaaaacagaaccaacatggatgttccacag-aagagaagagtgcagcaccaaaaacaaaact |
10831560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 298 - 579
Target Start/End: Complemental strand, 34276172 - 34275889
Alignment:
| Q |
298 |
cctagcattccaaatggaagagataatggagaccaatatcactcccaacctctcacagacggttttacctcctgcaactagacctttgaacaaaatgaga |
397 |
Q |
| |
|
|||||| |||||||||||| | ||||| |||||| | ||||| ||||||||||| || || ||||||||| ||||| |||| |||||| | | ||||| |
|
|
| T |
34276172 |
cctagctttccaaatggaatatataattgagacccagatcacacccaacctctcccaaacatttttacctcttgcaatcagacatttgaaaagattgaga |
34276073 |
T |
|
| Q |
398 |
cgct--caaatcctccttcaacaaaaacagccgaaacaccgagccatttcaacgactcactccaaatcgaccataaaacagcacaattgaaaag-gatat |
494 |
Q |
| |
|
| | ||||||| ||||||||||| || |||||| ||| || ||||| | ||||||||| |||||| |||| | |||||| |||| ||| |
|
|
| T |
34276072 |
tgttgtcaaatcc-ccttcaacaaagacgtttgaaacatcgaatcacttcaatgtctcactccatatcgacgccaaaataagacaattaaaaaaagatgc |
34275974 |
T |
|
| Q |
495 |
ggttcacagtctcaagcctaccgcaaccgccaacacagtataacgatgaattcaacctcacacctctaaggcttagattatcctt |
579 |
Q |
| |
|
||||||| ||||||||||||| ||| | |||||||| |||||| || ||||||||||||||||| | ||| ||||||||||||| |
|
|
| T |
34275973 |
agttcacaatctcaagcctaccacaaacaccaacacaatataacaataaattcaacctcacaccttttaggtttagattatcctt |
34275889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 539 - 587
Target Start/End: Original strand, 33598982 - 33599030
Alignment:
| Q |
539 |
gatgaattcaacctcacacctctaaggcttagattatccttagtgggta |
587 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
33598982 |
gatgaattcaacctcacatctctaaggcttagattatccttagtgggta |
33599030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 442 - 509
Target Start/End: Original strand, 33598897 - 33598964
Alignment:
| Q |
442 |
tttcaacgactcactccaaatcgaccataaaacagcacaattgaaaaggatatggttcacagtctcaa |
509 |
Q |
| |
|
||||||||||||||||||||| ||| |||||| || |||||| |||| ||||||||| ||||| |||| |
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|
| T |
33598897 |
tttcaacgactcactccaaattgacgataaaatagaacaattaaaaaagatatggttaacagtttcaa |
33598964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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