View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5988_low_20 (Length: 219)
Name: NF5988_low_20
Description: NF5988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5988_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 1e-98; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 44727134 - 44726945
Alignment:
| Q |
19 |
aaagatatatgttgggaaataattattgaaggcatggcataaaggagaaagtccttcaacacgattttgtctattgagtagtcttttcaaaatattttat |
118 |
Q |
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| T |
44727134 |
aaagatatatgttgggaaataattattgaaggcatggcataaaggagaaagtccttcaacacgattttgtctattgagtagtcttttcaaaatattttat |
44727035 |
T |
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| Q |
119 |
catctattagtggtaatgcaatgggtctttaataacatttgttagagaaatgttgacacccaaatgctatttgataccttgagagtgatg |
208 |
Q |
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| T |
44727034 |
catctattagtggtaatacaatgggtctttaataacatttgttagagaaatgttgacacccaaatgctatttgataccttgagagagatg |
44726945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 122
Target Start/End: Complemental strand, 44726222 - 44726125
Alignment:
| Q |
25 |
atatgttgggaaataattattgaaggcatggcataaaggagaaagtccttcaacacgatt-ttgtctattgagtagtcttttcaaaatattttatcatc |
122 |
Q |
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| T |
44726222 |
atatgtttggaaaaaattattggaggcatgacataaaggtgaaggtccttcaacatttttcttgtctattgagtagtcttttc-aaatactttatcatc |
44726125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 33 - 121
Target Start/End: Complemental strand, 44727894 - 44727805
Alignment:
| Q |
33 |
ggaaataattattgaaggcatggcataaaggagaaagtccttc-aacacgattttgtctattgagtagtcttttcaaaatattttatcat |
121 |
Q |
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| T |
44727894 |
ggaaaaaattattggaggcatgacataaaggagaaagtccttcgaatatttttttgtctattgggtagtcttttcaaaattctttatcat |
44727805 |
T |
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