View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5988_low_22 (Length: 201)
Name: NF5988_low_22
Description: NF5988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5988_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 124; Significance: 5e-64; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 38 - 186
Target Start/End: Original strand, 3022172 - 3022320
Alignment:
| Q |
38 |
gagagccttctccaaaggccaattcagagtaactacctatgtacgcccgccaacatagagnnnnnnnatcttctaatgttttccctcatattgtcttgta |
137 |
Q |
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| T |
3022172 |
gagagccttctccaaaggccaattcagagtaactacctatgtacgcccgccaacatagagtttttttatcttctaatgttttccctcatattgtcttgta |
3022271 |
T |
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| Q |
138 |
gcaataatgacatagctacctagctctttcttctcgctcaatttctgtg |
186 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3022272 |
gcaataatgacatagctacccagctctttcttctcgctcaatttctgtg |
3022320 |
T |
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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 186
Target Start/End: Complemental strand, 28661712 - 28661673
Alignment:
| Q |
147 |
acatagctacctagctctttcttctcgctcaatttctgtg |
186 |
Q |
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| T |
28661712 |
acatagctacctagctctttctcctcgctcaatttctgtg |
28661673 |
T |
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