View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5988_low_3 (Length: 493)
Name: NF5988_low_3
Description: NF5988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5988_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 16 - 451
Target Start/End: Complemental strand, 6211489 - 6211068
Alignment:
| Q |
16 |
attagtagtagcggttaatgtgatgtatgtatgtacatctcaatgccagttacttgatgtaagttactggcttctctatgttttaatcatacaataaaat |
115 |
Q |
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| T |
6211489 |
attagtattagcggttaatgtgatgtatgtatgtacatctcaatgccagttact--------------ggcttctctatgttttaatcatacaataaaat |
6211404 |
T |
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| Q |
116 |
gttcaacacttcaaagagatcaaaacagtcatttattggatgaattgaaccatatgactataatttacatgaccaaacctatagctaaaatacaatcatc |
215 |
Q |
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| T |
6211403 |
gttcaacacttcaaagagatcaaaacagtcatttattggatgaattgaaccatatgactataatttacatgaccaaacctatagctaaaatacaatcatc |
6211304 |
T |
|
| Q |
216 |
cccttaaaaaagacatgggacagagaaaatgaagaaatctcaatgcggggttatgcgagtatacgctgaggtatagaaggttccaacaatcttaaagcaa |
315 |
Q |
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| T |
6211303 |
cccttaaaaaagacatgggacagagaaaatgaagaaatctcaatgcggggttatgcgagtatacgctgaggtatagaaggttccaacaatcttaaagcaa |
6211204 |
T |
|
| Q |
316 |
aaggcacgtttgtgttggccttttgcaatgacaggttgtaaaaggaggagtagcacaagttttttgttgccattaaagagacagctatgcaaatttattg |
415 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
6211203 |
aaagcacgtttgtgttggccttttgcaatgacaggttgtaaaaggagtagcagcacaagttttttgttgtcattaaagagacagctatgcaaatttattg |
6211104 |
T |
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| Q |
416 |
cttctctacttcatgatttgaacttgtctcattagt |
451 |
Q |
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| T |
6211103 |
cttctctacttcatgatttgaacttgtctcattagt |
6211068 |
T |
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