View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5988_low_7 (Length: 390)
Name: NF5988_low_7
Description: NF5988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5988_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 342; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 12 - 373
Target Start/End: Complemental strand, 377992 - 377631
Alignment:
| Q |
12 |
acatcatcagccgctgctcacatgtgataggtgattttggtcatagaaagtgatgtatgctttatatattaatattcttggatacaaacagattctagta |
111 |
Q |
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| T |
377992 |
acatcatcagccgctgctcacatgtgataggtgattttggttatagaaagtgatgtatgctttatatattaatattcttggatacagacagattctagta |
377893 |
T |
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| Q |
112 |
tttttgttggaatgaagagacggtgtctggaaacctccatcaaattcatctttttgttatcctaacctttaaaccattcttcataagaagtacaattgaa |
211 |
Q |
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| T |
377892 |
tttttgttggaatgaagagacggtgtctggaaacctccatcaaattcatctttttgttatcctaaccttcaaaccattcttcattagaagtacaattgaa |
377793 |
T |
|
| Q |
212 |
tggcttaatataggaacatgaccatccactacttgaacacaatatttgctcaaaatagcaattgctatcattttaacttgaatgaaggacaagtcctttc |
311 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
377792 |
tgacttaatataggaacatgaccatccactacttgaacacaatatttgctcaaaatagcaattgctatcattttaacttgaatgaaggacaagtcctttc |
377693 |
T |
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| Q |
312 |
ccaaacaagtccttggtccagcattaaaactaaagaacttataagacggttcatgaacaatg |
373 |
Q |
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| T |
377692 |
ccaaacaagtccttggtccagcattaaaactaaagaacttataagacggttcatgaacaatg |
377631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 147 - 373
Target Start/End: Original strand, 355304 - 355530
Alignment:
| Q |
147 |
tccatcaaattcatctttttgttatcctaacctttaaaccattcttcataagaagtacaattgaatggcttaatataggaacatgaccatccactacttg |
246 |
Q |
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| T |
355304 |
tccatcaaatttctctttttgttatcctaaccttcaaaccattcttcataagaagtacaattgaatggcttaagataggaacatgaccatcaactacttg |
355403 |
T |
|
| Q |
247 |
aacacaatatttgctcaaaatagcaattgctatcattttaacttgaatgaaggacaagtcctttcccaaacaagtccttggtccagcattaaaactaaag |
346 |
Q |
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|||||||||||||||||||||||||||| | |||| |||| ||||||||||||||||||||||||||||||||| || |||||||||||| |||||| |
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| T |
355404 |
gacacaatatttgctcaaaatagcaattgttgtcatcttaatttgaatgaaggacaagtcctttcccaaacaagttctaggtccagcattataactaata |
355503 |
T |
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| Q |
347 |
aacttataagacggttcatgaacaatg |
373 |
Q |
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||||| ||||| ||| |||||||||| |
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| T |
355504 |
aacttgtaagatggtgtatgaacaatg |
355530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 162 - 373
Target Start/End: Original strand, 346660 - 346871
Alignment:
| Q |
162 |
tttttgttatcctaacctttaaaccattcttcataagaagtacaattgaatggcttaatataggaacatgaccatccactacttgaacacaatatttgct |
261 |
Q |
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| T |
346660 |
tttttgttatcttaaccttcaaaccattcttcataacaattacaattgaatggcttaagataggaacatgaccatcaactacttggacacaatatttgct |
346759 |
T |
|
| Q |
262 |
caaaatagcaattgctatcattttaacttgaatgaaggacaagtcctttcccaaacaagtccttggtccagcattaaaactaaagaacttataagacggt |
361 |
Q |
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| T |
346760 |
caaaatagcaattgttgtcatcttaatttgaatgaaggacaagtcctttcccaaacaagttctaggtccagcattataactaataaacttgtaagatggt |
346859 |
T |
|
| Q |
362 |
tcatgaacaatg |
373 |
Q |
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|||||||||| |
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| T |
346860 |
gtatgaacaatg |
346871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 284 - 373
Target Start/End: Complemental strand, 342004 - 341915
Alignment:
| Q |
284 |
ttaacttgaatgaaggacaagtcctttcccaaacaagtccttggtccagcattaaaactaaagaacttataagacggttcatgaacaatg |
373 |
Q |
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|||||||||||||| | ||| || |||||||||||||||| |||||||||||||||||||||||||| |||||||| ||| ||||||| |
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| T |
342004 |
ttaacttgaatgaaagccaactctcttcccaaacaagtcctaggtccagcattaaaactaaagaacttgtaagacggcgcataaacaatg |
341915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 278 - 373
Target Start/End: Complemental strand, 337972 - 337877
Alignment:
| Q |
278 |
atcattttaacttgaatgaaggacaagtcctttcccaaacaagtccttggtccagcattaaaactaaagaacttataagacggttcatgaacaatg |
373 |
Q |
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||||| ||||||||||| || | ||| || |||||||||||||||||||||||||||||||||||||||| || ||||| ||| ||| ||||||| |
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| T |
337972 |
atcatcttaacttgaatcaaagccaactctcttcccaaacaagtccttggtccagcattaaaactaaagaatttgtaagatggtgcataaacaatg |
337877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 147 - 287
Target Start/End: Complemental strand, 363371 - 363231
Alignment:
| Q |
147 |
tccatcaaattcatctttttgttatcctaacctttaaaccattcttcataagaagtacaattgaatggcttaatataggaacatgaccatccactacttg |
246 |
Q |
| |
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|||||||| || ||||||||| ||||||||||| |||||||| ||||| |||||||||||||||||| |||| ||||| | ||||| ||||| | | |
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| T |
363371 |
tccatcaattttctctttttgtgatcctaaccttcaaaccatttttcattagaagtacaattgaatggattaaagtaggagcttgaccttccaccgatag |
363272 |
T |
|
| Q |
247 |
aacacaatatttgctcaaaatagcaattgctatcattttaa |
287 |
Q |
| |
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||| | | |||| |||||| ||||||||||||||||||| |
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| T |
363271 |
gacaggaaagttgcacaaaattgcaattgctatcattttaa |
363231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 12164236 - 12164288
Alignment:
| Q |
305 |
tcctttcccaaacaagtccttggtccagcattaaaactaaagaacttataaga |
357 |
Q |
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||||| ||||||||| |||||||||||||||||||| || |||||| ||||| |
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| T |
12164236 |
tccttacccaaacaactccttggtccagcattaaaagcaatgaacttgtaaga |
12164288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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