View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5988_low_9 (Length: 387)
Name: NF5988_low_9
Description: NF5988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5988_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 1964738 - 1965107
Alignment:
| Q |
1 |
tagaagggtgtgggagcttttgggttcccaagaaaaattcaattgtaacaacgattaattaaatttcacaaaagggtgggtagtgatatacatatttttg |
100 |
Q |
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| T |
1964738 |
tagaagggtgtgggagcttttgggttcccaagaaaaattcaattgtaacaacgattaattaaatttcacaaaagggtgggtagtgatatacatatttttg |
1964837 |
T |
|
| Q |
101 |
attgaaataaacactaagatggggtgcatttgctcaaaatactcatcaaagaaagaaaaagttgaagaatttgaaaaggacagtgagtggaataaatctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1964838 |
attgaaataaacactaagatggggtgcatttgctcaaaatactcatcaaagaaagaaaaagttgaagaatttgaaaaggaaagtgagtggaataaatctt |
1964937 |
T |
|
| Q |
201 |
cagtgcaactagttgctcctacacagttaaatggggttaccattggcattgccttggatggttgtaattcaacacctcgtttggctaaggcgtcgtcaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1964938 |
cagtgcaactagttgctcctacacagttaaatggggttaccattggcattgccttggatggttgtaattcaacacctcgttttgctaaggcgtcgtcaca |
1965037 |
T |
|
| Q |
301 |
agtgtttagaagagcagaagagaaaatcattcaattagatgctgctaacaagaagagccagcatcaaagatgt |
373 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1965038 |
agtgtttagaagagcagaagagaaaatcattcaattagatgctgctaac---aagagccagcatcaaagatgt |
1965107 |
T |
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